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L3_079_000G1_scaffold_399

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_399_1
unknown

Not on your lists

comp(3..62)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_079_000G1_scaffold_399_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(656..955)
DNA (300bp) protein (100aa)
Ribosomal subunit interface protein n=3 Tax=Parabacteroides merdae RepID=A7AD73_9PORP
Ribosomal subunit interface protein {ECO:0000313|EMBL:EDN87015.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
sigma-54 modulation protein
L3_079_000G1_scaffold_399_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(952..1860)
DNA (909bp) protein (303aa)
Tyrosine recombinase XerC n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD74_9PORP
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
tyrosine type site-specific recombinase
L3_079_000G1_scaffold_399_4
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1937..2128)
DNA (192bp) protein (64aa)
30S ribosomal protein S21 n=6 Tax=Parabacteroides RepID=A7AD75_9PORP
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
rpsU; 30S ribosomal protein S21
L3_079_000G1_scaffold_399_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2226..3275)
DNA (1050bp) protein (350aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Methylthioribose-1-phosphate isomerase n=2 Tax=Parabacteroides merdae RepID=A7AD76_9PORP
mtnA; methylthioribose-1-phosphate isomerase
L3_079_000G1_scaffold_399_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3600..4676
DNA (1077bp) protein (359aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD79_9PORP
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase {ECO:0000313|EMBL:EDN87021.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_079_000G1_scaffold_399_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5031..5972)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=4 Tax=Parabacteroides RepID=A7AD80_9PORP
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:EDN87022.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_079_000G1_scaffold_399_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6119..7810)
DNA (1692bp) protein (564aa)
Alpha amylase, catalytic domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD81_9PORP
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EDN87023.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase family protein
L3_079_000G1_scaffold_399_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7869..8708)
DNA (840bp) protein (280aa)
Phospholipase, patatin family n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD82_9PORP
Phospholipase, patatin family {ECO:0000313|EMBL:EDN87024.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000G1_scaffold_399_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8889..11093
DNA (2205bp) protein (735aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=3 Tax=Parabacteroides RepID=A7AD83_9PORP
L3_079_000G1_scaffold_399_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11559..13751
DNA (2193bp) protein (731aa)
Glutamate--ammonia ligase, catalytic domain protein n=5 Tax=Parabacteroides RepID=A7AD85_9PORP
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EDN87027.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glutamine synthetase
L3_079_000G1_scaffold_399_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13849..15009
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD86_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87028.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
conserved hypothetical lipoprotein
L3_079_000G1_scaffold_399_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15025..15996)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B9R8_9PORP
F5/8 type C domain protein {ECO:0000313|EMBL:EDN87029.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
beta-glycosidase
L3_079_000G1_scaffold_399_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16373..16687
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5ZU77_9PORP
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDN87030.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L3_079_000G1_scaffold_399_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16748..17020)
DNA (273bp) protein (91aa)
alpha-glucosidase (EC:3.2.1.20)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9Y8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13136.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000G1_scaffold_399_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16969..17940)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y421_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13137.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
L3_079_000G1_scaffold_399_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17879..19108)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD90_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87032.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000G1_scaffold_399_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19050..19880)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AXY1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87032.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000G1_scaffold_399_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20048..21397)
DNA (1350bp) protein (450aa)
Outer membrane efflux protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD91_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN87033.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane transport/efflux protein
L3_079_000G1_scaffold_399_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21415..22536)
DNA (1122bp) protein (374aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Parabacteroides merdae RepID=A7AD92_9PORP
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EDN87034.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
membrane fusion efflux protein
L3_079_000G1_scaffold_399_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22623..23891)
DNA (1269bp) protein (423aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7AD93_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87035.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
efflux ABC transporter permease
L3_079_000G1_scaffold_399_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23916..25181)
DNA (1266bp) protein (422aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7AD94_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87036.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
efflux ABC transporter permease
L3_079_000G1_scaffold_399_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25174..25860)
DNA (687bp) protein (229aa)
ABC transporter, ATP-binding protein n=2 Tax=Parabacteroides merdae RepID=A7AD95_9PORP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN87037.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ABC transporter ATP-binding protein
L3_079_000G1_scaffold_399_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26216..27397
DNA (1182bp) protein (394aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WKA0_9PORP
phosphoribosylglycinamide formyltransferase
L3_079_000G1_scaffold_399_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27496..28218
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZE0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11562.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metal dependent hydrolase
L3_079_000G1_scaffold_399_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28247..28624
DNA (378bp) protein (126aa)
Glyoxalase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5R0_9PORP
Glyoxalase family protein {ECO:0000313|EMBL:CDD11561.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
lactoylglutathione lyase
L3_079_000G1_scaffold_399_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28745..29707
DNA (963bp) protein (321aa)
ROK family protein n=3 Tax=Parabacteroides RepID=A7ADA0_9PORP
ROK family protein {ECO:0000313|EMBL:EDN87041.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional repressor
L3_079_000G1_scaffold_399_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29811..30326
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXA8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11559.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
mutT family protein
L3_079_000G1_scaffold_399_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30407..33406
DNA (3000bp) protein (1000aa)
Tetratricopeptide repeat protein n=2 Tax=Parabacteroides merdae RepID=A7ADA2_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN87044.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000G1_scaffold_399_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33416..35167
DNA (1752bp) protein (584aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADA3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87045.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB-dependent receptor
Displaying items 1-30 of 118 in total

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