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L3_079_000G1_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_419_1
unknown

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1..93
DNA (93bp) protein (31aa)

This feature has no annotations

L3_079_000G1_scaffold_419_2
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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226..1020
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DHB7_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK77091.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_3
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1187..2212
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Clostridium RepID=D4C8T1_9CLOT
L3_079_000G1_scaffold_419_4
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2668..3561
DNA (894bp) protein (298aa)
Acyl-ACP thioesterase n=1 Tax=Clostridium sp. M62/1 RepID=D4C8T0_9CLOT
Acyl-ACP thioesterase {ECO:0000313|EMBL:EFE13917.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Acyl-ACP thioesterase
L3_079_000G1_scaffold_419_5
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3667..4500
DNA (834bp) protein (278aa)
Uncharacterized protein conserved in bacteria n=3 Tax=Clostridium RepID=D6DHC0_CLOSC
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK77094.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_6
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4595..4969
DNA (375bp) protein (125aa)
Endoribonuclease L-PSP n=3 Tax=Clostridium RepID=D6DHC1_CLOSC
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:CCY81447.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_419_7
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5287..6060
DNA (774bp) protein (258aa)
Transcriptional regulators of sugar metabolism n=3 Tax=Clostridium RepID=D6DHC3_CLOSC
Transcriptional regulators of sugar metabolism
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CBK77097.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_8
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6711..7823
DNA (1113bp) protein (371aa)
Ethanolamine utilization protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DHC5_CLOSC
Ethanolamine utilization protein
Ethanolamine utilization protein {ECO:0000313|EMBL:CBL36833.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_419_9
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7951..9447
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Clostridium sp. CAG:149 RepID=R5M8B1_9CLOT
L3_079_000G1_scaffold_419_10
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9477..10916
DNA (1440bp) protein (480aa)
Predicted dehydrogenase n=3 Tax=Clostridiales RepID=D4MSU5_9FIRM
Predicted dehydrogenase
Predicted dehydrogenase {ECO:0000313|EMBL:CBL36831.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_419_11
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10981..12303
DNA (1323bp) protein (441aa)
Thioredoxin reductase n=2 Tax=Clostridium RepID=D6DHC8_CLOSC
Thioredoxin reductase
Thioredoxin reductase {ECO:0000313|EMBL:CCY81455.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_419_12
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12307..12687
DNA (381bp) protein (127aa)
Uncharacterized protein with conserved CXXC pairs n=2 Tax=Clostridium RepID=D6DHC9_CLOSC
Uncharacterized protein with conserved CXXC pairs
Uncharacterized protein with conserved CXXC pairs {ECO:0000313|EMBL:CBK77103.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12708..13502
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46204.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative AraC family transcriptional regulator
L3_079_000G1_scaffold_419_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13635..15005
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46203.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sodium:proline symporter
L3_079_000G1_scaffold_419_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15097..16827
DNA (1731bp) protein (577aa)
Gamma-glutamyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFI2_9FIRM
Gamma-glutamyltransferase {ECO:0000313|EMBL:EGJ46202.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
gamma-glutamyltransferase
L3_079_000G1_scaffold_419_16
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16992..17147)
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MSU4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL36830.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_419_17
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17482..18057
DNA (576bp) protein (192aa)
BioY family protein n=2 Tax=Clostridium RepID=D4C8R8_9CLOT
BioY family protein {ECO:0000313|EMBL:CCY81469.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_000G1_scaffold_419_18
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18120..18560
DNA (441bp) protein (147aa)
Uncharacterized conserved protein n=4 Tax=Clostridiales RepID=D4MSU3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL36829.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_419_19
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18733..20295)
DNA (1563bp) protein (521aa)
Putative stage V sporulation protein B n=1 Tax=Clostridium sp. CAG:149 RepID=R5LQK6_9CLOT
Putative stage V sporulation protein B {ECO:0000313|EMBL:CCY81473.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
polysaccharide biosynthesis protein
L3_079_000G1_scaffold_419_20
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20447..21628
DNA (1182bp) protein (394aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000313|EMBL:CBK77107.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Cysteine desulfurase NifS n=4 Tax=Clostridiales RepID=D4MSU2_9FIRM
L3_079_000G1_scaffold_419_21
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21815..22252
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=3 Tax=Clostridium RepID=D6DHD4_CLOSC
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU Clostridium type {ECO:0000313|EMBL:CCY81477.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_419_22
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22258..23337
DNA (1080bp) protein (360aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. M62/1 RepID=D4C8R2_9CLOT
L3_079_000G1_scaffold_419_23
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23334..24869
DNA (1536bp) protein (512aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DHD6_CLOSC
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CBK77110.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_24
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25362..25535)
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C8Q9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY84427.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_000G1_scaffold_419_25
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26038..26499
DNA (462bp) protein (154aa)
Predicted integral membrane protein n=2 Tax=Clostridium RepID=D6DHF4_CLOSC
Predicted integral membrane protein
Predicted integral membrane protein {ECO:0000313|EMBL:CBK77128.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_26
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26587..27414
DNA (828bp) protein (276aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. M62/1 RepID=D4C8Q6_9CLOT
tRNA pseudouridine synthase A
L3_079_000G1_scaffold_419_27
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27460..28044
DNA (585bp) protein (195aa)
RNA polymerase sigma factor, sigma-70 family n=2 Tax=Clostridium RepID=D6DHF5_CLOSC
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBK77129.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_28
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28047..29537
DNA (1491bp) protein (497aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C8Q4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13891.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_079_000G1_scaffold_419_29
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30097..30369
DNA (273bp) protein (91aa)
Uncharacterized conserved protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DHF7_CLOSC
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK77131.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_419_30
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31235..32344
DNA (1110bp) protein (370aa)
ABC-type sugar transport systems, ATPase components n=2 Tax=Clostridium RepID=D6DHF8_CLOSC
ABC-type sugar transport systems, ATPase components
ABC-type sugar transport systems, ATPase components {ECO:0000313|EMBL:CBK77132.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Displaying items 1-30 of 58 in total

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