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L3_079_000G1_scaffold_583

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_583_1
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1054
DNA (1053bp) protein (351aa)
Elongation factor Tu n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUL5_9BIFI
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
tuf; translation elongation factor Tu
L3_079_000G1_scaffold_583_2
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1285..1851
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HBN1_BIFBI
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
efp; translation elongation factor P
L3_079_000G1_scaffold_583_3
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1878..2408
DNA (531bp) protein (177aa)
N utilization substance protein B homolog n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=NUSB_BIFLS
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
NusB antitermination factor
L3_079_000G1_scaffold_583_4
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2521..3711
DNA (1191bp) protein (397aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Carbamoyl-phosphate synthase small chain n=2 Tax=Bifidobacterium RepID=C0BPP9_9BIFI
carbamoyl phosphate synthase small subunit
L3_079_000G1_scaffold_583_5
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3704..7081
DNA (3378bp) protein (1126aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=5 Tax=Bifidobacterium RepID=I3WIZ7_BIFBI
L3_079_000G1_scaffold_583_6
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7081..8025
DNA (945bp) protein (315aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:KFI89286.1}; EC=4.1.1.23 {ECO:0000313|EMBL:KFI89286.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XXG3_9BIFI
orotidine 5'-phosphate decarboxylase
L3_079_000G1_scaffold_583_7
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8031..8639
DNA (609bp) protein (203aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
Guanylate kinase n=17 Tax=Bifidobacterium RepID=KGUA_BIFLO
gmk; gmk
L3_079_000G1_scaffold_583_8
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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8750..9808
DNA (1059bp) protein (353aa)
Glycosyltransferase {ECO:0000313|EMBL:KFI70712.1}; EC=2.4.2.53 {ECO:0000313|EMBL:KFI70712.1};; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
glycosyltransferase (EC:2.4.1.83)
Glycosyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0E2_BIFBP
L3_079_000G1_scaffold_583_9
Bifidobacterium angulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9765..11408
DNA (1644bp) protein (548aa)
Uncharacterized protein {ECO:0000313|EMBL:KJX91733.1}; TaxID=1683 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium angulatum.;"
hypothetical protein
Uncharacterized protein id=2443978 bin=GWC2_TM7_44_17 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
L3_079_000G1_scaffold_583_10
unknown

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12083..12553
DNA (471bp) protein (157aa)
Damage inducible
L3_079_000G1_scaffold_583_11
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12732..14567)
DNA (1836bp) protein (612aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
dihydroxy-acid dehydratase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B55CCF
L3_079_000G1_scaffold_583_12
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14725..15009
DNA (285bp) protein (95aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega n=4 Tax=root RepID=RPOZ_BIFAA
L3_079_000G1_scaffold_583_13
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15203..16414
DNA (1212bp) protein (404aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Bifidobacterium minimum RepID=UPI0003B5F5D0
L3_079_000G1_scaffold_583_14
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16459..18687
DNA (2229bp) protein (743aa)
Putative primosomal protein N n=2 Tax=Bifidobacterium dentium RepID=E0Q7Y3_9BIFI
Primosome assembly protein PriA {ECO:0000313|EMBL:KFI89291.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
primosome assembly protein PriA
L3_079_000G1_scaffold_583_15
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18775..19479
DNA (705bp) protein (235aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUP7_BIFLS
HAD-superfamily hydrolase {ECO:0000313|EMBL:KFI83490.1}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
HAD-superfamily hydrolase
L3_079_000G1_scaffold_583_16
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19554..20519
DNA (966bp) protein (322aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Methionyl-tRNA formyltransferase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=FMT_BIFAA
methionyl-tRNA formyltransferase
L3_079_000G1_scaffold_583_17
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20576..21247)
DNA (672bp) protein (224aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:KFI89294.1}; EC=3.1.3.3 {ECO:0000313|EMBL:KFI89294.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
serB1; phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase SerB n=2 Tax=Bifidobacterium dentium RepID=E0Q7Y0_9BIFI
L3_079_000G1_scaffold_583_18
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21296..21994
DNA (699bp) protein (233aa)
membrane protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B3AF48
DedA family protein {ECO:0000313|EMBL:KFI60825.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
membrane protein
L3_079_000G1_scaffold_583_19
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21991..23547
DNA (1557bp) protein (519aa)
ATPase AAA (EC:3.6.4.6)
AAA ATPase forming ring-shaped complexes n=2 Tax=Bifidobacterium dentium RepID=E0Q7X9_9BIFI
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
L3_079_000G1_scaffold_583_20
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23562..25208
DNA (1647bp) protein (549aa)
Pup-ligase protein {ECO:0000313|EMBL:KFI89297.1}; EC=6.3.2.- {ECO:0000313|EMBL:KFI89297.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Hypothetical proteasome-associated protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A0U5_BIFAA
proteasome-associated protein
L3_079_000G1_scaffold_583_21
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25277..26119
DNA (843bp) protein (281aa)
Inositol monophosphatase {ECO:0000313|EMBL:KFI83484.1}; EC=3.1.3.25 {ECO:0000313|EMBL:KFI83484.1};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
inositol monophosphatase family protein (EC:3.1.3.25)
Inositol monophosphatase family protein n=2 Tax=Bifidobacterium dentium RepID=D2Q9C8_BIFDB
L3_079_000G1_scaffold_583_22
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26181..26372
DNA (192bp) protein (64aa)
Prokaryotic ubiquitin-like protein Pup n=3 Tax=Bifidobacterium RepID=PUP_BIFAA
Ubiquitin-like protein Pup {ECO:0000313|EMBL:KFI60821.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
hypothetical protein
L3_079_000G1_scaffold_583_23
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26372..27910
DNA (1539bp) protein (513aa)
Pup-ligase protein {ECO:0000313|EMBL:KFI89300.1}; EC=6.3.2.- {ECO:0000313|EMBL:KFI89300.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Pup--protein ligase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8ATU0_BIFLN
putative proteasome component
L3_079_000G1_scaffold_583_24
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27986..28267)
DNA (282bp) protein (94aa)
DNA-binding protein HB1 n=23 Tax=Gardnerella vaginalis RepID=E3D9I0_GARV3
DNA-binding protein HB1 {ECO:0000313|EMBL:KFI89301.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
hup; DNA-binding protein HU
L3_079_000G1_scaffold_583_25
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28406..30868)
DNA (2463bp) protein (821aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q7X1_9BIFI
Putative membrane protein {ECO:0000313|EMBL:KFI60818.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
hypothetical protein
L3_079_000G1_scaffold_583_26
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30947..32392)
DNA (1446bp) protein (482aa)
Adenylosuccinate lyase {ECO:0000313|EMBL:KFI60817.1}; EC=4.3.2.2 {ECO:0000313|EMBL:KFI60817.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=3 Tax=Bifidobacterium bifidum RepID=I3WH52_BIFBI
L3_079_000G1_scaffold_583_27
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32560..32967
DNA (408bp) protein (136aa)
Transcriptional regulator, winged helix family {ECO:0000313|EMBL:KFI60816.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFI60816.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
Transcriptional regulator n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CLE8_9ACTN
transcriptional regulator
L3_079_000G1_scaffold_583_28
Bifidobacterium biavatii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33182..34114
DNA (933bp) protein (311aa)
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:KFI52766.1}; EC=3.6.3.28 {ECO:0000313|EMBL:KFI52766.1};; TaxID=1437608 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium biavatii DSM 23969.;"
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7UYR4_EEGSY
hypothetical protein
L3_079_000G1_scaffold_583_29
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34114..34905
DNA (792bp) protein (264aa)
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7UYR5_EEGSY
Ribose/xylose/arabinose/galactoside ABC transporter, permease {ECO:0000313|EMBL:KFI83476.1}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
AraH; ribose/xylose/arabinose/galactoside ABC transporter, permease
L3_079_000G1_scaffold_583_30
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35072..36646)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7W9_9BIFI
PGAP1-like domain protein {ECO:0000313|EMBL:KFI60815.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
hypothetical protein
Displaying items 1-30 of 72 in total

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