ggKbase home page

L3_079_000G1_scaffold_810

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_810_1
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(278..1501)
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=2 Tax=Clostridiales RepID=B0NDB1_CLOSV
L3_079_000G1_scaffold_810_2
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1545..2156)
DNA (612bp) protein (204aa)
Uncharacterized protein n=3 Tax=Anaerostipes RepID=B0MA50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR98891.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
hypothetical protein
L3_079_000G1_scaffold_810_3
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2603..3637)
DNA (1035bp) protein (345aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Blautia producta RepID=UPI000380278D
Putative D-galactose-binding periplasmic protein {ECO:0000313|EMBL:ERI66041.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_079_000G1_scaffold_810_4
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3669..4667)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037B92FA
Uncharacterized protein {ECO:0000313|EMBL:EOS22686.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L3_079_000G1_scaffold_810_5
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4627..6495)
DNA (1869bp) protein (623aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
histidine kinase n=1 Tax=Blautia producta RepID=UPI0003663270
L3_079_000G1_scaffold_810_6
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6485..8200)
DNA (1716bp) protein (572aa)
chemotaxis protein CheY n=1 Tax=Blautia producta RepID=UPI0003822A45
Uncharacterized protein {ECO:0000313|EMBL:EOS22688.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
two component transcriptional regulator, AraC family
L3_079_000G1_scaffold_810_7
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8263..9918)
DNA (1656bp) protein (552aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Lachnospiraceae RepID=C9L3Y8_BLAHA
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EEX23120.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L3_079_000G1_scaffold_810_8
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9937..11445)
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
ABC transporter, ATP-binding protein n=3 Tax=Clostridium RepID=D4CGT7_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY86115.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_810_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11560..12849)
DNA (1290bp) protein (430aa)
Galactose/glucose-binding lipoprotein n=2 Tax=Clostridium RepID=B6FLV8_9CLOT
Galactose/glucose-binding lipoprotein {ECO:0000313|EMBL:EEA82985.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_079_000G1_scaffold_810_10
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13042..13779)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4J4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG72987.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_079_000G1_scaffold_810_11
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13779..14957)
DNA (1179bp) protein (393aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDA7_CLOSV
L3_079_000G1_scaffold_810_12
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14954..15826)
DNA (873bp) protein (291aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G811_9FIRM
L3_079_000G1_scaffold_810_13
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15844..16944)
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=2 Tax=Clostridiales RepID=B0ND96_CLOSV
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
GTP-binding protein YchF
L3_079_000G1_scaffold_810_14
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17042..17704)
DNA (663bp) protein (221aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EDS06068.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EDS06068.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=2 Tax=Clostridiales RepID=B0NH58_CLOSV
L3_079_000G1_scaffold_810_15
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17697..18359)
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=2 Tax=Clostridiales RepID=B0NH57_CLOSV
L3_079_000G1_scaffold_810_16
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18362..19240)
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Dorea sp. CAG:105 RepID=R5DG71_9FIRM
L3_079_000G1_scaffold_810_17
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19244..21310)
DNA (2067bp) protein (689aa)
PASTA domain./Protein kinase domain. (EC:2.7.11.1)
Kinase domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BZR9_9CLOT
Kinase domain protein {ECO:0000313|EMBL:EEG74647.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L3_079_000G1_scaffold_810_18
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21304..22047)
DNA (744bp) protein (248aa)
Serine/threonine phosphatase stp {ECO:0000313|EMBL:EDS06064.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EDS06064.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Serine/threonine protein phosphatase (EC:3.1.3.16)
Serine/threonine phosphatase stp n=2 Tax=Clostridiales RepID=B0NH54_CLOSV
L3_079_000G1_scaffold_810_19
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22025..23095)
DNA (1071bp) protein (357aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJM6_9FIRM
L3_079_000G1_scaffold_810_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23088..24386)
DNA (1299bp) protein (433aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Dorea longicatena CAG:42 RepID=R7FQZ0_9FIRM
16S rRNA methyltransferase B
L3_079_000G1_scaffold_810_21
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24390..25091)
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KRQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN39406.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
putative Zn-dependent protease
L3_079_000G1_scaffold_810_22
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25255..26217)
DNA (963bp) protein (321aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Dorea sp. CAG:317 RepID=R6W6F4_9FIRM
L3_079_000G1_scaffold_810_23
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26232..26720)
DNA (489bp) protein (163aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NH49_CLOSV
L3_079_000G1_scaffold_810_24
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26751..28979)
DNA (2229bp) protein (743aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Primosomal protein N n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NH48_CLOSV
primosomal protein N
L3_079_000G1_scaffold_810_25
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28969..30435)
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KRQ4_9FIRM
L3_079_000G1_scaffold_810_26
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30560..31774
DNA (1215bp) protein (405aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Peptidase T n=1 Tax=Dorea sp. CAG:317 RepID=R6XJZ0_9FIRM
tripeptide aminopeptidase
L3_079_000G1_scaffold_810_27
unknown

Not on your lists

comp(31829..32287)
DNA (459bp) protein (153aa)

This feature has no annotations

L3_079_000G1_scaffold_810_28
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32311..34236)
DNA (1926bp) protein (642aa)
Sigma-70 region 2 n=1 Tax=Dorea sp. CAG:105 RepID=R5DB97_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:CCX74082.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
RNA polymerase sigma factor, sigma-70 family
L3_079_000G1_scaffold_810_29
unknown

Not on your lists

comp(34509..35207)
DNA (699bp) protein (233aa)

This feature has no annotations

L3_079_000G1_scaffold_810_30
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(35250..35606)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8T0_ATOPD
Zinc-ribbon domain protein {ECO:0000313|EMBL:EWC91362.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy