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L3_079_000M1_scaffold_1232

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1232_1
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(254..1123)
DNA (870bp) protein (290aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
4-hydroxy-tetrahydrodipicolinate synthase n=8 Tax=root RepID=DAPA_BACV8
dihydrodipicolinate synthase
L3_079_000M1_scaffold_1232_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1249..3246)
DNA (1998bp) protein (666aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
DNA ligase n=1 Tax=Bacteroides vulgatus PC510 RepID=D4V7F1_BACVU
DNA ligase
L3_079_000M1_scaffold_1232_3
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3345..4019
DNA (675bp) protein (225aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
tRNA (guanine-N(1)-)-methyltransferase n=7 Tax=Bacteroides RepID=TRMD_BACV8
L3_079_000M1_scaffold_1232_4
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4385..5296)
DNA (912bp) protein (304aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit n=3 Tax=Bacteroides RepID=PYRDB_BACV8
dihydroorotate dehydrogenase 1B
L3_079_000M1_scaffold_1232_5
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5284..6063)
DNA (780bp) protein (260aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=7 Tax=Bacteroides RepID=A6L5H2_BACV8
dihydroorotate dehydrogenase, electron transfer subunit
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
L3_079_000M1_scaffold_1232_6
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6157..6570)
DNA (414bp) protein (138aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=A6L5H3_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIY74787.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L3_079_000M1_scaffold_1232_7
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7732..8748)
DNA (1017bp) protein (339aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:KDS47807.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KDS47807.1};; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
Uncharacterized protein n=6 Tax=Bacteroides RepID=A6L5H4_BACV8
hypothetical protein
L3_079_000M1_scaffold_1232_8
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8760..9536)
DNA (777bp) protein (259aa)
AMP nucleosidase (EC:3.2.2.4)
AMP nucleosidase n=7 Tax=Bacteroides RepID=A6L5H5_BACV8
AMP nucleosidase {ECO:0000313|EMBL:EOS01758.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_079_000M1_scaffold_1232_9
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9594..10043
DNA (450bp) protein (150aa)
Uncharacterized protein n=15 Tax=Bacteroides RepID=A6L5H6_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EET15104.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
L3_079_000M1_scaffold_1232_10
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10147..10938)
DNA (792bp) protein (264aa)
Uncharacterized protein n=15 Tax=Bacteroides RepID=A6L5H7_BACV8
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEB24851.1}; TaxID=483217 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei DSM 17855.;"
L3_079_000M1_scaffold_1232_11
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10947..12041)
DNA (1095bp) protein (365aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
Putative GTP cyclohydrolase 1 type 2 n=4 Tax=Bacteroides RepID=C6Z2J3_9BACE
hypothetical protein
L3_079_000M1_scaffold_1232_12
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12103..12381)
DNA (279bp) protein (93aa)
Uncharacterized protein n=11 Tax=Bacteroides RepID=A6L5H9_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS01754.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_079_000M1_scaffold_1232_13
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12440..13237)
DNA (798bp) protein (266aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=C6Z2J1_9BACE
ABC transporter membrane protein
Putative ABC transport system membrane protein {ECO:0000313|EMBL:CDF17847.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L3_079_000M1_scaffold_1232_14
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13246..13914)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus CAG:6 RepID=R7P0Q9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDF17848.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
ABC transporter ATP-binding protein
L3_079_000M1_scaffold_1232_15
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(13949..15439)
DNA (1491bp) protein (497aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
Proline--tRNA ligase n=7 Tax=Bacteroides RepID=SYP_BACV8
L3_079_000M1_scaffold_1232_16
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15554..16705)
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus PC510 RepID=D4V7G5_BACVU
Putative membrane protein {ECO:0000313|EMBL:KDS31201.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
hypothetical protein
L3_079_000M1_scaffold_1232_17
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16709..18736)
DNA (2028bp) protein (676aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=435590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).;"
Glycoside hydrolase family 13, candidate 1,4-alpha-glucan branching enzyme n=6 Tax=Bacteroides RepID=A6L5I4_BACV8
1,4-alpha-glucan branching protein
L3_079_000M1_scaffold_1232_18
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18765..19205)
DNA (441bp) protein (147aa)
Uncharacterized protein n=5 Tax=Bacteroides RepID=A6L5I5_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS47796.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
L3_079_000M1_scaffold_1232_19
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19242..19907)
DNA (666bp) protein (222aa)
TIGR02453 family protein n=6 Tax=Bacteroides RepID=C6Z2I5_9BACE
TIGR02453 family domain protein {ECO:0000313|EMBL:KDS47795.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
hypothetical protein
L3_079_000M1_scaffold_1232_20
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19983..20771)
DNA (789bp) protein (263aa)
Inositol-1-monophosphatase n=7 Tax=Bacteroides RepID=A6L5I7_BACV8
inositol-1-monophosphatase
Uncharacterized protein {ECO:0000313|EMBL:EIY74802.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L3_079_000M1_scaffold_1232_21
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20779..21897)
DNA (1119bp) protein (373aa)
MORN repeat protein n=2 Tax=Bacteroides RepID=C6Z2I3_9BACE
MORN repeat protein {ECO:0000313|EMBL:EET15092.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
phosphatidylinositol-4-phosphate 5-kinase
L3_079_000M1_scaffold_1232_22
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21969..23255)
DNA (1287bp) protein (429aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EET15091.1}; EC=3.4.24.- {ECO:0000313|EMBL:EET15091.1};; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
Peptidase M16 inactive domain protein n=2 Tax=Bacteroides RepID=C6Z2I2_9BACE
zinc protease
L3_079_000M1_scaffold_1232_23
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23256..24014)
DNA (759bp) protein (253aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=7 Tax=Bacteroides RepID=KDSB_BACV8
L3_079_000M1_scaffold_1232_24
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24093..24467
DNA (375bp) protein (125aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=7 Tax=Bacteroides RepID=A6L5J1_BACV8
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EIY74806.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L3_079_000M1_scaffold_1232_25
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24930..25421
DNA (492bp) protein (164aa)
Transcriptional regulator, TetR family n=4 Tax=Bacteroides RepID=C6Z2H9_9BACE
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:KDS47789.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
histidine kinase
L3_079_000M1_scaffold_1232_26
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25418..25822
DNA (405bp) protein (135aa)
Outer membrane efflux protein n=3 Tax=Bacteroides RepID=C6Z2H8_9BACE
Outer membrane efflux family protein {ECO:0000313|EMBL:KDS47788.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
transporter
L3_079_000M1_scaffold_1232_27
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25864..26589
DNA (726bp) protein (242aa)
Outer membrane efflux protein n=3 Tax=Bacteroides RepID=C6Z2H8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY74808.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
transporter
L3_079_000M1_scaffold_1232_28
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26576..27472
DNA (897bp) protein (299aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C6Z2H7_9BACE
ABC transport system {ECO:0000313|EMBL:EFV68259.1}; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
membrane protein
L3_079_000M1_scaffold_1232_29
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27481..28935
DNA (1455bp) protein (485aa)
ABC transporter, ATP-binding protein n=2 Tax=Bacteroides RepID=C6Z2H6_9BACE
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EET15085.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
ABC transporter ATP-binding protein
L3_079_000M1_scaffold_1232_30
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28959..30065
DNA (1107bp) protein (369aa)
ABC-2 type transporter n=3 Tax=Bacteroides RepID=C6Z2H5_9BACE
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
multidrug ABC transporter permease
Displaying items 1-30 of 57 in total

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