ggKbase home page

L3_079_000M1_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 312 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_17_1
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..304
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9S0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67416.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_079_000M1_scaffold_17_2
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

398..844
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003690B47
Uncharacterized protein {ECO:0000313|EMBL:KJJ68649.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
L3_079_000M1_scaffold_17_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1088..1525
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YW34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56409.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_079_000M1_scaffold_17_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1540..3024
DNA (1485bp) protein (495aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CMU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF52123.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Sel1 domain-containing protein repeat-containing protein
L3_079_000M1_scaffold_17_5
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3090..3320
DNA (231bp) protein (77aa)
SpoVT/AbrB-like protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CBL4_9CLOT
SpoVT/AbrB-like protein {ECO:0000313|EMBL:ERI81925.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
SpoVT/AbrB domain-containing protein
L3_079_000M1_scaffold_17_6
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3317..3718
DNA (402bp) protein (134aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Ribonuclease VapC n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BUQ8_9CLOT
PilT protein domain protein
L3_079_000M1_scaffold_17_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4173..4835
DNA (663bp) protein (221aa)
Nucleotidyltransferase substrate binding protein, HI0074 family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2B7_9FIRM
nucleotidyltransferase substrate binding protein, HI0074 family
Nucleotidyltransferase substrate binding protein, HI0074 family {ECO:0000313|EMBL:CBL00416.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_079_000M1_scaffold_17_8
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4920..5843
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QK72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK56599.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_079_000M1_scaffold_17_9
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5853..7163
DNA (1311bp) protein (437aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2Q1H6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK56600.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_079_000M1_scaffold_17_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8060..8602
DNA (543bp) protein (181aa)
TraG/TraD family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BGB5_9CLOT
TraG/TraD family protein {ECO:0000313|EMBL:ERI71220.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_079_000M1_scaffold_17_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8607..8867
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YUY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM41337.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_079_000M1_scaffold_17_12
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9668..10423
DNA (756bp) protein (252aa)
TIGR00268 family protein n=2 Tax=Oscillibacter RepID=U2QK82_9FIRM
TIGR00268 family protein {ECO:0000313|EMBL:ERK56609.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_079_000M1_scaffold_17_13
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10439..11200
DNA (762bp) protein (254aa)
phosphoribosylaminoimidazole carboxylase (EC:4.1.1.21)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2RSU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK56608.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_079_000M1_scaffold_17_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11202..12491
DNA (1290bp) protein (430aa)
UPF0272 protein HMPREF1546_04175 n=2 Tax=Oscillibacter RepID=U2S1B5_9FIRM
UPF0272 protein HMPREF1546_04175 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_079_000M1_scaffold_17_15
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12510..14129
DNA (1620bp) protein (540aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Oscillibacter RepID=U2QJE1_9FIRM
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ERK56606.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC-type dipeptide transport system, periplasmic component
L3_079_000M1_scaffold_17_16
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14170..15162
DNA (993bp) protein (331aa)
Putative oligopeptide ABC transporter, permease protein AppB n=2 Tax=Oscillibacter RepID=U2Q1I0_9FIRM
Putative oligopeptide ABC transporter, permease protein AppB {ECO:0000313|EMBL:ERK56605.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_079_000M1_scaffold_17_17
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15159..15980
DNA (822bp) protein (274aa)
ABC transporter, permease protein n=2 Tax=Oscillibacter RepID=U2QK77_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:ERK56604.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_079_000M1_scaffold_17_18
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16027..16965
DNA (939bp) protein (313aa)
Putative oligopeptide ABC transporter, ATP-binding protein OppD n=2 Tax=Oscillibacter RepID=U2RST6_9FIRM
Putative oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:ERK56603.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC transporter
L3_079_000M1_scaffold_17_19
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16962..17585
DNA (624bp) protein (208aa)
ABC transporter, ATP-binding protein n=2 Tax=Oscillibacter RepID=U2S1B1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK56602.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC transporter
L3_079_000M1_scaffold_17_20
unknown

Not on your lists

17749..17892
DNA (144bp) protein (48aa)

This feature has no annotations

L3_079_000M1_scaffold_17_21
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18202..18708
DNA (507bp) protein (169aa)
DNA-binding helix-turn-helix protein n=2 Tax=Actinobacteria RepID=E6M199_9ACTO
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFU82918.1}; TaxID=887899 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
Helix-turn-helix.
L3_079_000M1_scaffold_17_22
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19212..20657
DNA (1446bp) protein (482aa)
Aldehyde-alcohol dehydrogenase domain protein n=2 Tax=Oscillibacter RepID=U2R8I7_9FIRM
Aldehyde-alcohol dehydrogenase domain protein {ECO:0000313|EMBL:ERK64849.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_079_000M1_scaffold_17_23
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20669..21892
DNA (1224bp) protein (408aa)
III protein, CoA-transferase family n=2 Tax=Oscillibacter RepID=U2QPK5_9FIRM
III protein, CoA-transferase family {ECO:0000313|EMBL:ERK64850.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L-carnitine dehydratase/bile acid-inducible protein F
L3_079_000M1_scaffold_17_24
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21894..23882
DNA (1989bp) protein (663aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI000364EED1
Uncharacterized protein {ECO:0000313|EMBL:EOS46057.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
NADH:flavin oxidoreductase
L3_079_000M1_scaffold_17_25
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

23895..25652
DNA (1758bp) protein (586aa)
Probable molybdopterin binding domain protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3ACM3_CARHZ
molybdopterin binding domain-containing protein
Probable molybdopterin binding domain protein {ECO:0000313|EMBL:ABB15031.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
L3_079_000M1_scaffold_17_26
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

25679..27748
DNA (2070bp) protein (690aa)
NAD-reducing hydrogenase subunit HoxF n=3 Tax=Dehalobacter RepID=T0J939_9FIRM
hymB; putative iron-only hydrogenase, electron-transferring subunit HymB
Tax=GWC2_Clostridiales_40_7_curated
L3_079_000M1_scaffold_17_27
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27735..29162
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM21 RepID=J3EXS7_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM21077.1}; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM21.;"
hypothetical protein
L3_079_000M1_scaffold_17_28
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29237..30520
DNA (1284bp) protein (428aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24Z93_DESHY
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE82649.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
L3_079_000M1_scaffold_17_29
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30662..32062
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Brevibacillus laterosporus RepID=UPI00035D3213
drug resistance transporter, EmrB/QacA subfamily
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:CQR54343.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
L3_079_000M1_scaffold_17_30
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32401..33501
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Gracilibacillus lacisalsi RepID=UPI00036C0DF7
aryl-alcohol dehydrogenase
Tax=BJP_IG2069_Syntrophobacterales_47_18
Displaying items 1-30 of 312 in total

View Taxonomy