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L3_079_000M1_scaffold_72

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_72_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(70..249)
DNA (180bp) protein (60aa)
Uncharacterized protein n=6 Tax=root RepID=A5Z9Z5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09831.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_079_000M1_scaffold_72_2
unknown

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comp(532..624)
DNA (93bp) protein (31aa)

This feature has no annotations

L3_079_000M1_scaffold_72_3
unknown

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comp(661..867)
DNA (207bp) protein (69aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030B0FE1
L3_079_000M1_scaffold_72_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1019..3664)
DNA (2646bp) protein (882aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:CBK94677.1}; EC=2.7.9.1 {ECO:0000313|EMBL:CBK94677.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=2 Tax=Eubacterium rectale RepID=C4ZAU6_EUBR3
L3_079_000M1_scaffold_72_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3899..5296)
DNA (1398bp) protein (466aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8T1_9FIRM
glycyl-tRNA synthetase
L3_079_000M1_scaffold_72_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5355..6146)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79860.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_72_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6208..6939)
DNA (732bp) protein (244aa)
DNA repair protein RecO n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVV6_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA replication and repair protein RecO
L3_079_000M1_scaffold_72_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6884..7063)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79858.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_72_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7151..8059)
DNA (909bp) protein (303aa)
GTPase Era n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGH7_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
GTP-binding protein Era
L3_079_000M1_scaffold_72_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8079..11006)
DNA (2928bp) protein (976aa)
Predicted Zn-dependent peptidases insulinase-like n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8S6_9FIRM
Predicted Zn-dependent peptidases insulinase-like {ECO:0000313|EMBL:CCZ79856.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted Zn-dependent peptidases, insulinase-like
L3_079_000M1_scaffold_72_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11047..11943)
DNA (897bp) protein (299aa)
Mechanosensitive channel protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP41_9FIRM
Mechanosensitive channel protein {ECO:0000313|EMBL:CCZ79855.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Small-conductance mechanosensitive channel
L3_079_000M1_scaffold_72_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11979..13217)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79854.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_72_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13341..14504)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79853.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_72_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14506..15588)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGH1_9FIRM
L3_079_000M1_scaffold_72_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15624..17303)
DNA (1680bp) protein (560aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8S1_9FIRM
L3_079_000M1_scaffold_72_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17322..18995)
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP36_9FIRM
L3_079_000M1_scaffold_72_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19008..20108)
DNA (1101bp) protein (367aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVU7_9FIRM
L3_079_000M1_scaffold_72_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20311..20634)
DNA (324bp) protein (108aa)
Preprotein translocase subunit YajC n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNI7_9FIRM
Preprotein translocase subunit YajC {ECO:0000313|EMBL:CCZ79848.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
preprotein translocase subunit YajC
L3_079_000M1_scaffold_72_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20713..21861)
DNA (1149bp) protein (383aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGG7_9FIRM
L3_079_000M1_scaffold_72_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21888..23651)
DNA (1764bp) protein (588aa)
Glycosidases n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8R6_9FIRM
Glycosidases {ECO:0000313|EMBL:CCZ79846.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosidases
L3_079_000M1_scaffold_72_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23772..24872
DNA (1101bp) protein (367aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP31_9FIRM
L3_079_000M1_scaffold_72_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24941..25762)
DNA (822bp) protein (274aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L-rhamnulose 1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVU1_9FIRM
L3_079_000M1_scaffold_72_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25791..27041)
DNA (1251bp) protein (417aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNI2_9FIRM
L3_079_000M1_scaffold_72_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27054..28457)
DNA (1404bp) protein (468aa)
rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGG2_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:CCZ79842.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_72_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28571..30463)
DNA (1893bp) protein (631aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8R0_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CCZ79841.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
diguanylate cyclase (GGDEF) domain
L3_079_000M1_scaffold_72_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30482..32215)
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B6G2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56569.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
methyl-accepting chemotaxis protein
L3_079_000M1_scaffold_72_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32232..33713)
DNA (1482bp) protein (494aa)
rha78B; alpha-L-rhamnosidase (EC:3.2.1.40)
Alpha-L-rhamnosidase Rha78B n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJM6_9FIRM
Alpha-L-rhamnosidase Rha78B {ECO:0000313|EMBL:CCZ78240.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_72_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33732..35417)
DNA (1686bp) protein (562aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.52)
Beta-glucosidase-related glycosidases n=1 Tax=Roseburia sp. CAG:18 RepID=R5V467_9FIRM
L3_079_000M1_scaffold_72_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35515..36519)
DNA (1005bp) protein (335aa)
Sugar ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBU5_9FIRM
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CCZ78242.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sugar ABC transporter permease
L3_079_000M1_scaffold_72_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36649..37836)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78243.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying items 1-30 of 100 in total

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