ggKbase home page
This organism can only be binned in the context of its binning project GWF2. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

L3_079_000M1_scaffold_145

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_145_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

425..1585
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y294_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12547.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_145_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1621..1779
DNA (159bp) protein (53aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7A9J2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12548.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_145_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1906..5301
DNA (3396bp) protein (1132aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X092_9PORP
two-component system sensor histidine kinase
L3_079_000M1_scaffold_145_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5329..6540
DNA (1212bp) protein (404aa)
L-fucose:H+ symporter permease n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B5L8_9PORP
L-fucose:H+ symporter permease {ECO:0000313|EMBL:EEC98248.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
fucose permease
L3_079_000M1_scaffold_145_5
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6614..7495)
DNA (882bp) protein (294aa)
Kinase, PfkB family n=5 Tax=Parabacteroides RepID=A7ACH5_9PORP
Kinase, PfkB family {ECO:0000313|EMBL:EEC98247.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
ribokinase
L3_079_000M1_scaffold_145_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8083..8652
DNA (570bp) protein (190aa)
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BFJ1_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN87514.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RNA polymerase sigma-70 factor
L3_079_000M1_scaffold_145_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8721..9704
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WN05_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12553.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_145_8
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9852..10238
DNA (387bp) protein (129aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides RepID=B7B5L4_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EEC98244.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
TonB-dependent receptor plug
L3_079_000M1_scaffold_145_9
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10275..13145
DNA (2871bp) protein (957aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroides cellulosilyticus CL02T12C19 RepID=I9R6N3_9BACE
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EIY37678.1}; TaxID=997874 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus CL02T12C19.;"
TonB-dependent receptor plug
L3_079_000M1_scaffold_145_10
Bacteroides cellulosilyticus CAG:158, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13173..14903
DNA (1731bp) protein (577aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8WIL0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB70861.1}; TaxID=1263038 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulosilyticus CAG:158.;"
RagB/SusD domain-containing protein
L3_079_000M1_scaffold_145_11
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14928..16238
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003744FA2
Oxidoreductase , NAD-binding Rossmann fold family protein {ECO:0000313|EMBL:KDS41903.1}; TaxID=1339341 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3776 Po2 i.;"
oxidoreductase domain-containing protein
L3_079_000M1_scaffold_145_12
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16259..17032
DNA (774bp) protein (258aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R6UTT9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDC87905.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
hypothetical protein
L3_079_000M1_scaffold_145_13
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17081..18001
DNA (921bp) protein (307aa)
Tat pathway signal sequence domain protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TJT2_9BACE
hypothetical protein
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEU49274.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_079_000M1_scaffold_145_14
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18028..18981
DNA (954bp) protein (318aa)
Putative nucleoside hydrolase n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IUJ4_9PORP
nucleoside hydrolase
Uncharacterized protein {ECO:0000313|EMBL:EKN22034.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
L3_079_000M1_scaffold_145_15
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19041..20678
DNA (1638bp) protein (546aa)
Bacterial alpha-L-rhamnosidase n=2 Tax=Bacteroidales RepID=D0THY7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EKN23616.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
glycoside hydrolase
L3_079_000M1_scaffold_145_16
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21229..22515)
DNA (1287bp) protein (429aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Parabacteroides RepID=B7B5K8_9PORP
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
L3_079_000M1_scaffold_145_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22612..23472
DNA (861bp) protein (287aa)
Dihydropteroate synthase n=3 Tax=Parabacteroides merdae RepID=A7AJ28_9PORP
Dihydropteroate synthase {ECO:0000313|EMBL:EKN13986.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
dihydropteroate synthase
L3_079_000M1_scaffold_145_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23477..24262
DNA (786bp) protein (262aa)
TIGR00159 family protein n=3 Tax=Parabacteroides RepID=A7AJ27_9PORP
TIGR00159 family protein {ECO:0000313|EMBL:CDD14390.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_145_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24395..25408
DNA (1014bp) protein (338aa)
Phosphate acetyltransferase n=5 Tax=Parabacteroides RepID=A7AJ26_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14389.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphotransacetylase/phosphate acetyltransferase
L3_079_000M1_scaffold_145_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25494..26693
DNA (1200bp) protein (400aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Acetate kinase n=4 Tax=Parabacteroides RepID=A7AJ25_9PORP
acetate kinase
L3_079_000M1_scaffold_145_21
unknown

Not on your lists

26959..27189
DNA (231bp) protein (77aa)

This feature has no annotations

L3_079_000M1_scaffold_145_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27286..28062)
DNA (777bp) protein (259aa)
Ser/Thr phosphatase family protein n=2 Tax=Parabacteroides merdae RepID=A7AJ23_9PORP
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EDN85390.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
UDP-2,3-diacylglucosamine hydrolase
L3_079_000M1_scaffold_145_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28067..28384)
DNA (318bp) protein (106aa)
FeS assembly SUF system protein n=3 Tax=Parabacteroides RepID=K6A6H4_9PORP
Putative FeS assembly SUF system protein {ECO:0000313|EMBL:EDN85389.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_145_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28539..29219)
DNA (681bp) protein (227aa)
DNA repair protein RadC n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZRN2_9PORP
DNA repair protein RadC {ECO:0000313|EMBL:EKN13980.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
DNA repair protein
L3_079_000M1_scaffold_145_25
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29305..29868)
DNA (564bp) protein (188aa)
Elongation factor P n=7 Tax=Parabacteroides RepID=A7AJ20_9PORP
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
elongation factor P
L3_079_000M1_scaffold_145_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30059..30757)
DNA (699bp) protein (233aa)
TIGR00659 family protein n=3 Tax=Parabacteroides merdae RepID=K6AE31_9PORP
Putative TIGR00659 family protein {ECO:0000313|EMBL:EDN85386.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_145_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30750..31100)
DNA (351bp) protein (117aa)
LrgA family protein n=3 Tax=Parabacteroides RepID=A7AJ18_9PORP
LrgA family protein {ECO:0000313|EMBL:EDN85385.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_145_28
unknown

Not on your lists

31203..31370
DNA (168bp) protein (56aa)

This feature has no annotations

L3_079_000M1_scaffold_145_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32029..32571
DNA (543bp) protein (181aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides RepID=A7AJ15_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14395.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L3_079_000M1_scaffold_145_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32726..33907
DNA (1182bp) protein (394aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides merdae RepID=A7AJ14_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN85381.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-FecI sigma factor, FecR
Displaying items 1-30 of 76 in total

View Taxonomy