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L3_079_000M1_scaffold_157

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_157_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(125..1072)
DNA (948bp) protein (316aa)
Tat pathway signal sequence domain protein n=3 Tax=Parabacteroides RepID=A7ABW7_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EDN87750.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
type I phosphodiesterase/nucleotide pyrophosphatase
L3_079_000M1_scaffold_157_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1069..3582)
DNA (2514bp) protein (838aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WS33_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14123.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_157_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4183..5178)
DNA (996bp) protein (332aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6BL44_9PORP
Glycosyl hydrolase family 43 {ECO:0000313|EMBL:CDD14122.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
1,4-beta-xylanase
L3_079_000M1_scaffold_157_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5195..6259)
DNA (1065bp) protein (355aa)
Arabinan endo-1,5-alpha-L-arabinosidase n=2 Tax=Parabacteroides merdae RepID=A7ABW3_9PORP
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EDN87746.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_157_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6346..8187)
DNA (1842bp) protein (614aa)
SusD family protein n=2 Tax=Parabacteroides merdae RepID=A7ABW2_9PORP
SusD family protein {ECO:0000313|EMBL:EDN87745.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
SusD family.
L3_079_000M1_scaffold_157_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8207..11716)
DNA (3510bp) protein (1170aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides merdae RepID=A7ABW1_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDN87744.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB-dependent Receptor Plug Domain./TonB dependent receptor.
L3_079_000M1_scaffold_157_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11944..12969)
DNA (1026bp) protein (342aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Parabacteroides RepID=A7ABW0_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN87743.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative anti sigma factor
L3_079_000M1_scaffold_157_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13088..13672)
DNA (585bp) protein (195aa)
RNA polymerase sigma-70 factor n=4 Tax=Parabacteroides RepID=A7ABV9_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14117.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase ECF-type sigma factor
L3_079_000M1_scaffold_157_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13825..14178
DNA (354bp) protein (118aa)
Thioredoxin n=4 Tax=Parabacteroides RepID=A7ABV7_9PORP
Thioredoxin {ECO:0000313|EMBL:EKN10844.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
thioredoxin
L3_079_000M1_scaffold_157_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14231..17719)
DNA (3489bp) protein (1163aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXS6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14115.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_157_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17749..18417)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YBU5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10842.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_000M1_scaffold_157_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18518..18760
DNA (243bp) protein (81aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7ABV4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14114.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_157_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18751..19065
DNA (315bp) protein (105aa)
Plasmid stabilization system protein, RelE/ParE family n=3 Tax=Parabacteroides RepID=A7ABV3_9PORP
Plasmid stabilization system protein RelE/ParE family {ECO:0000313|EMBL:CDD14113.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_157_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19189..20211
DNA (1023bp) protein (341aa)
PhoH family protein n=4 Tax=Parabacteroides RepID=A7ABV2_9PORP
PhoH family protein {ECO:0000313|EMBL:CDD14112.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphate starvation-inducible protein PhoH
L3_079_000M1_scaffold_157_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20233..21180
DNA (948bp) protein (316aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=4 Tax=Parabacteroides RepID=A7ABV1_9PORP
L3_079_000M1_scaffold_157_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21192..21959
DNA (768bp) protein (256aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Demethylmenaquinone methyltransferase n=2 Tax=Parabacteroides merdae RepID=A7ABV0_9PORP
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase
L3_079_000M1_scaffold_157_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21981..22721
DNA (741bp) protein (247aa)
Shikimate 5-dehydrogenase n=3 Tax=Parabacteroides merdae RepID=K5YBU1_9PORP
Putative shikimate dehydrogenase {ECO:0000313|EMBL:EDN87732.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
shikimate 5-dehydrogenase
L3_079_000M1_scaffold_157_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22809..23414)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ABU8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87731.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
siderophore biosynthesis regulatory protein
L3_079_000M1_scaffold_157_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23426..24001)
DNA (576bp) protein (192aa)
Gliding motility-associated lipoprotein GldD n=3 Tax=Parabacteroides RepID=K5ZPG7_9PORP
Putative gliding motility-associated lipoprotein GldD {ECO:0000313|EMBL:EDN87730.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_157_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24001..25341)
DNA (1341bp) protein (447aa)
Gliding motility-associated protein GldE n=3 Tax=Parabacteroides merdae RepID=A7ABU6_9PORP
Gliding motility-associated protein GldE {ECO:0000313|EMBL:EDN87729.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hemolysin-like protein
L3_079_000M1_scaffold_157_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25367..25870)
DNA (504bp) protein (168aa)
Single-stranded DNA-binding protein n=3 Tax=Parabacteroides RepID=A7ABU5_9PORP
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ssDNA-binding protein
L3_079_000M1_scaffold_157_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25913..27142)
DNA (1230bp) protein (410aa)
A/G-specific adenine glycosylase n=2 Tax=Parabacteroides merdae RepID=A7ABU4_9PORP
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EDN87727.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
A/G-specific adenine glycosylase
L3_079_000M1_scaffold_157_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27191..27463
DNA (273bp) protein (91aa)
DNA-binding protein HU n=7 Tax=Parabacteroides RepID=A7ABU3_9PORP
DNA-binding protein HU {ECO:0000313|EMBL:EDN87726.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-binding protein HU
L3_079_000M1_scaffold_157_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27692..29272
DNA (1581bp) protein (527aa)
S1 RNA binding domain protein n=3 Tax=Parabacteroides RepID=A7ABU2_9PORP
S1 RNA binding domain protein {ECO:0000313|EMBL:CDD14102.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ribonuclease G
L3_079_000M1_scaffold_157_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29333..30349
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z5K8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10829.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
putative endonuclease/exonuclease/phosphatase family protein
L3_079_000M1_scaffold_157_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30479..31876)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ABT3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87716.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
oxidoreductase
L3_079_000M1_scaffold_157_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32212..32361)
DNA (150bp) protein (50aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6BL15_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14098.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_157_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32542..34686
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 PF4_9PORP">RepID=K5ZPF4_9PORP
VirE N-terminal domain protein {ECO:0000313|EMBL:EDN87713.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_157_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35400..35627)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A7ABS9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13130.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_157_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35995..36447
DNA (453bp) protein (151aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AZ17_9PORP
Putative DNA-binding protein {ECO:0000313|EMBL:CDD13131.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 79 in total

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