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L3_079_000M1_scaffold_186

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_186_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(700..1509)
DNA (810bp) protein (270aa)
ABC-3 protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEM2_9FIRM
ABC-3 protein {ECO:0000313|EMBL:CCZ64080.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ABC transporter
L3_079_000M1_scaffold_186_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1510..2343)
DNA (834bp) protein (278aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=U2NZN2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK43610.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ZnuC; Mn/Zn ABC transporter ATPase
L3_079_000M1_scaffold_186_3
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2343..3395)
DNA (1053bp) protein (351aa)
ABC-type metal ion transport system periplasmic component/surface adhesin n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEI9_9FIRM
ABC-type metal ion transport system periplasmic component/surface adhesin {ECO:0000313|EMBL:CCZ64078.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L3_079_000M1_scaffold_186_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3385..3993)
DNA (609bp) protein (203aa)
Probable GTP-binding protein EngB n=2 Tax=Clostridiales RepID=U2QY01_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L3_079_000M1_scaffold_186_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3983..6319)
DNA (2337bp) protein (779aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Lon protease n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QQM3_9FIRM
ATP-dependent protease La
L3_079_000M1_scaffold_186_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6413..7672)
DNA (1260bp) protein (420aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Clostridiales RepID=R5TEL7_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_079_000M1_scaffold_186_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7696..8280)
DNA (585bp) protein (195aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Clostridiales RepID=R5TL79_9FIRM
L3_079_000M1_scaffold_186_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8388..9731)
DNA (1344bp) protein (448aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Trigger factor n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEI5_9FIRM
trigger factor
L3_079_000M1_scaffold_186_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10001..11587
DNA (1587bp) protein (529aa)
Helix-hairpin-helix domain-containing protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U4Q2_9FIRM
Helix-hairpin-helix domain-containing protein {ECO:0000313|EMBL:CCZ64072.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_186_10
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11692..12447
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TYQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64071.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_186_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12525..12878)
DNA (354bp) protein (118aa)
Cupin domain protein n=2 Tax=Clostridiales RepID=R5TEL4_9FIRM
Cupin domain protein {ECO:0000313|EMBL:CCZ64070.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_186_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12978..13733)
DNA (756bp) protein (252aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=2 Tax=Clostridiales RepID=R5TL75_9FIRM
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:CCZ64069.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_079_000M1_scaffold_186_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13835..15115)
DNA (1281bp) protein (427aa)
Putative transporter n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEI1_9FIRM
Putative transporter {ECO:0000313|EMBL:CCZ64068.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative transporter
L3_079_000M1_scaffold_186_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15112..15630)
DNA (519bp) protein (173aa)
TRAP transporter, DctQ-like membrane protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NZP6_9FIRM
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:ERK43625.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative transporter
L3_079_000M1_scaffold_186_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15716..16813)
DNA (1098bp) protein (366aa)
Putative transporter n=1 Tax=Roseburia sp. CAG:50 RepID=R5TYQ4_9FIRM
Putative transporter {ECO:0000313|EMBL:CCZ64066.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative transporter
L3_079_000M1_scaffold_186_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16931..17653
DNA (723bp) protein (241aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
deoD; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase DeoD-type n=2 Tax=Clostridiales RepID=R5TEL1_9FIRM
L3_079_000M1_scaffold_186_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18519..20357)
DNA (1839bp) protein (613aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PIQ4_9FIRM
L3_079_000M1_scaffold_186_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20514..21812)
DNA (1299bp) protein (433aa)
Peptidase, S41 family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NZQ1_9FIRM
Peptidase, S41 family {ECO:0000313|EMBL:ERK43630.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
carboxyl-terminal protease
L3_079_000M1_scaffold_186_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21833..23038)
DNA (1206bp) protein (402aa)
Peptidase, M23 family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PHJ0_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:ERK43631.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Membrane-bound metallopeptidase
L3_079_000M1_scaffold_186_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23202..24110)
DNA (909bp) protein (303aa)
Cell division protein FtsX n=2 Tax=Clostridiales RepID=U2QY19_9FIRM
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FtsX; cell division protein
L3_079_000M1_scaffold_186_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24100..24786)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64060.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_186_22
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24880..25962)
DNA (1083bp) protein (361aa)
Transcriptional regulator CdaR family n=1 Tax=Roseburia sp. CAG:50 RepID=R5TL68_9FIRM
Transcriptional regulator CdaR family {ECO:0000313|EMBL:CCZ64059.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
transcriptional regulator, CdaR family
L3_079_000M1_scaffold_186_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26124..26999)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64058.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_186_24
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27090..27782)
DNA (693bp) protein (231aa)
Teichoic acid biosynthesis proteins (EC:2.4.1.187)
Glycosyltransferase, WecB/TagA/CpsF family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QY24_9FIRM
Glycosyltransferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:ERK43637.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_079_000M1_scaffold_186_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28087..29085)
DNA (999bp) protein (333aa)
NLP/P60 family protein n=2 Tax=Clostridiales RepID=R5TYP7_9FIRM
NLP/P60 family protein {ECO:0000313|EMBL:CCZ64056.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
N-acetylmuramoyl-L-alanine amidase, C-terminus
L3_079_000M1_scaffold_186_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29321..31834)
DNA (2514bp) protein (838aa)
penicillin-binding protein, 1A family (EC:2.4.1.- 3.4.-.-)
Penicillin-binding protein, 1A family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PIR3_9FIRM
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ERK43639.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_079_000M1_scaffold_186_27
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31980..32621
DNA (642bp) protein (214aa)
YigZ family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NZQ9_9FIRM
YigZ family protein {ECO:0000313|EMBL:ERK43640.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
conserved hypothetical protein TIGR00257
L3_079_000M1_scaffold_186_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32961..33689
DNA (729bp) protein (243aa)
Acyl-ACP thioesterase (EC:3.1.2.14)
Acyl-ACP thioesterase n=2 Tax=Clostridiales RepID=R5TEH3_9FIRM
Acyl-ACP thioesterase {ECO:0000313|EMBL:ERK43641.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_079_000M1_scaffold_186_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33723..34556
DNA (834bp) protein (278aa)
S1 RNA binding domain protein n=2 Tax=Clostridiales RepID=R5U4N6_9FIRM
S1 RNA binding domain protein {ECO:0000313|EMBL:CCZ64052.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_186_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34694..36808)
DNA (2115bp) protein (705aa)
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TYP6_9FIRM
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:ERK43643.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Displaying items 1-30 of 75 in total

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