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L3_079_000M1_scaffold_244

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_244_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3..221
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTN8_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN86898.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_244_2
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


359..511
DNA (153bp) protein (51aa)
50S ribosomal protein L34 n=18 Tax=Bacteroidales RepID=A7AE63_9PORP
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
50S ribosomal protein L34
L3_079_000M1_scaffold_244_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

632..1264
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B3D1_9PORP
PASTA domain protein {ECO:0000313|EMBL:CDD11267.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_244_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1267..2346
DNA (1080bp) protein (360aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Pseudouridine synthase n=3 Tax=Parabacteroides RepID=A7AE65_9PORP
ribosomal large subunit pseudouridine synthase D
L3_079_000M1_scaffold_244_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2350..3327
DNA (978bp) protein (326aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Parabacteroides RepID=K6BQA6_9PORP
L3_079_000M1_scaffold_244_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3417..4574
DNA (1158bp) protein (386aa)
Acyltransferase n=3 Tax=Parabacteroides RepID=A7AE67_9PORP
Acyltransferase {ECO:0000313|EMBL:CDD11264.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_244_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4683..8651)
DNA (3969bp) protein (1323aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B2M5_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EDN86905.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system sensor histidine kinase/response regulator
L3_079_000M1_scaffold_244_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8874..10106
DNA (1233bp) protein (411aa)
Nucleoside transporter n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AE70_9PORP
Nucleoside transporter {ECO:0000313|EMBL:EDN86907.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
major facilitator transporter
L3_079_000M1_scaffold_244_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10699..11907
DNA (1209bp) protein (403aa)
Ornithine-oxo-acid transaminase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z0C2_9PORP
Ornithine-oxo-acid transaminase {ECO:0000313|EMBL:EKN08944.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
acetylornithine aminotransferase
L3_079_000M1_scaffold_244_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11914..12810
DNA (897bp) protein (299aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Arginase n=2 Tax=Parabacteroides RepID=K5ZCM3_9PORP
arginase
L3_079_000M1_scaffold_244_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12789..12899)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WJE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11258.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_244_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12915..15218)
DNA (2304bp) protein (768aa)
Outer membrane protein OMP85 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4R3_9PORP
Outer membrane protein OMP85 family {ECO:0000313|EMBL:CDD11256.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_244_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15215..19843)
DNA (4629bp) protein (1543aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y6Y3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08947.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_000M1_scaffold_244_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20018..20806
DNA (789bp) protein (263aa)
Inositol monophosphatase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XC74_9PORP
Inositol monophosphatase family protein {ECO:0000313|EMBL:CDD13956.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
inositol-1-monophosphatase
L3_079_000M1_scaffold_244_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21211..22749)
DNA (1539bp) protein (513aa)
Bacterial group 2 Ig-like protein n=2 Tax=Parabacteroides merdae RepID=A7AE79_9PORP
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EDN86916.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative lipoprotein
L3_079_000M1_scaffold_244_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22776..25517)
DNA (2742bp) protein (914aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTM4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08951.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-dependent receptor
L3_079_000M1_scaffold_244_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25591..25968
DNA (378bp) protein (126aa)
Thioesterase family protein n=4 Tax=Parabacteroides RepID=A7AE80_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08952.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Thioesterase superfamily
L3_079_000M1_scaffold_244_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26534..26656)
DNA (123bp) protein (41aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6AQN5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13758.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_244_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26853..29288
DNA (2436bp) protein (812aa)
TonB-dependent receptor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y5Q3_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD13757.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L3_079_000M1_scaffold_244_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29514..30719
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTL9_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD13756.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_244_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30817..34176
DNA (3360bp) protein (1120aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B2L0_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD13755.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Outer membrane receptor proteins, mostly Fe transport
L3_079_000M1_scaffold_244_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34205..36163
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B3B4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08958.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ragB/SusD family protein
L3_079_000M1_scaffold_244_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36223..36759)
DNA (537bp) protein (179aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=K6AQN2_9PORP
Sigma-70 region 2 {ECO:0000313|EMBL:CDD13753.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative RNA polymerase ECF-type sigma factor
L3_079_000M1_scaffold_244_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37591..38679
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BQ88_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13868.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_244_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39163..40680
DNA (1518bp) protein (506aa)
acetyl-CoA carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y607_9PORP
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:CDD13867.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_244_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40694..41233
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Y6Z6_9PORP
Biotin-requiring enzyme {ECO:0000313|EMBL:CDD13866.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
biotin/lipoyl attachment domain-containing protein
L3_079_000M1_scaffold_244_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41211..42743
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
Carboxyl transferase domain protein n=2 Tax=Parabacteroides RepID=A7A9G3_9PORP
Carboxyl transferase domain protein {ECO:0000313|EMBL:CDD13865.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_244_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

42898..44247
DNA (1350bp) protein (450aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7A9G4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08964.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_000M1_scaffold_244_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44286..44786)
DNA (501bp) protein (167aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=4 Tax=Parabacteroides RepID=A7A9G5_9PORP
L3_079_000M1_scaffold_244_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44891..47098)
DNA (2208bp) protein (736aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y600_9PORP
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDD13862.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Displaying items 1-30 of 55 in total

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