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L3_079_000M1_scaffold_249

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_249_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..3216)
DNA (3216bp) protein (1072aa)
Repeat protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDR3_9FIRM
Repeat protein {ECO:0000313|EMBL:EEC89094.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
cell wall/surface repeat-containing protein
L3_079_000M1_scaffold_249_2
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(3284..3637)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7S0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74864.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_079_000M1_scaffold_249_3
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(3817..5130)
DNA (1314bp) protein (438aa)
Bacterial transcriptional activator domain protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D3T4_9FIRM
Bacterial transcriptional activator domain protein {ECO:0000313|EMBL:CCX74863.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
SARP family transcriptional regulator
L3_079_000M1_scaffold_249_4
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5352..6419)
DNA (1068bp) protein (356aa)
Twitching motility protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXY0_9FIRM
Twitching motility protein PilT {ECO:0000313|EMBL:KJF41269.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative ATPase involved in pili biogenesis
L3_079_000M1_scaffold_249_5
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6435..6818)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F2Z6_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI99621.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_079_000M1_scaffold_249_6
unknown

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comp(6815..7240)
DNA (426bp) protein (142aa)

This feature has no annotations

L3_079_000M1_scaffold_249_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7237..7701)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65182.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_079_000M1_scaffold_249_8
Gordonibacter pamelaeae, Gordonibacter, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(7711..8031)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium difficile F501 RepID=T4BGL7_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL04192.1}; TaxID=657308 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Gordonibacter.;" source="Gordonibacter pamelaeae 7-10-1-b.;"
L3_079_000M1_scaffold_249_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8042..9082)
DNA (1041bp) protein (347aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXX5_9FIRM
Type II secretion system protein {ECO:0000313|EMBL:KJF41265.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Type II secretory pathway, component PulF
L3_079_000M1_scaffold_249_10
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9107..10042)
DNA (936bp) protein (312aa)
Transglutaminase-like protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F2Z0_CLOS4
Transglutaminase-like protein {ECO:0000313|EMBL:ERI99616.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_079_000M1_scaffold_249_11
Enterococcus cecorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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10644..11075
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Enterococcus cecorum DSM 20682 = ATCC 43198 RepID=S1RJA5_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:ESK62715.1}; TaxID=1121864 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus cecorum DSM 20682 = ATCC 43198.;"
merR regulatory family protein
L3_079_000M1_scaffold_249_12
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11186..12625)
DNA (1440bp) protein (480aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AFL7_9CLOT
L3_079_000M1_scaffold_249_13
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12645..13334)
DNA (690bp) protein (230aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAR5_9CLOT
L3_079_000M1_scaffold_249_14
unknown

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13955..14509
DNA (555bp) protein (185aa)

This feature has no annotations

L3_079_000M1_scaffold_249_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14588..15760)
DNA (1173bp) protein (391aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A5J9_9CLOT
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:CCX38148.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_079_000M1_scaffold_249_16
Defluviitoga tunisiensis, Defluviitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

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comp(15886..17952)
DNA (2067bp) protein (689aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084, ECO:0000313|EMBL:CEP78374.1};; TaxID=1006576 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Defluviitoga.;" source="Defluviitoga tunisiensis.;"
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BHE4_PETMO
L3_079_000M1_scaffold_249_17
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18154..19536)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAK6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX38077.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
putative efflux protein, MATE family
L3_079_000M1_scaffold_249_18
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19544..20893)
DNA (1350bp) protein (450aa)
UPI0002E0D887 related cluster n=1 Tax=unknown RepID=UPI0002E0D887
MATE efflux family protein {ECO:0000313|EMBL:EEG31818.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Na+-driven multidrug efflux pump
L3_079_000M1_scaffold_249_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21104..21394)
DNA (291bp) protein (97aa)
Stress responsive alpha-beta barrel domain-containing protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NEY9_9CLOT
Stress responsive alpha-beta barrel domain-containing protein {ECO:0000313|EMBL:CDC09680.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_079_000M1_scaffold_249_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21700..22545)
DNA (846bp) protein (282aa)
Protein-(Glutamine-N5) methyltransferase release factor-specific n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A4X5_9CLOT
Protein-(Glutamine-N5) methyltransferase release factor-specific {ECO:0000313|EMBL:CCX38135.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
protein-(glutamine-N5) methyltransferase
L3_079_000M1_scaffold_249_21
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(22542..23477)
DNA (936bp) protein (312aa)
PF07136 family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZKT0_9FIRM
PF07136 family protein {ECO:0000313|EMBL:CDD31042.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Predicted metal-dependent enzyme
L3_079_000M1_scaffold_249_22
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(23506..24996)
DNA (1491bp) protein (497aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
GHKL domain protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YR78_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_079_000M1_scaffold_249_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25265..25969)
DNA (705bp) protein (235aa)
PhoP family transcriptional regulator n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036DDFAF
Response regulator receiver domain protein {ECO:0000313|EMBL:EJF41817.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_079_000M1_scaffold_249_24
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26009..27358)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A4E9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37955.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
putative secreted protein
L3_079_000M1_scaffold_249_25
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

27533..28000
DNA (468bp) protein (156aa)
VanZ-like protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XTT9_9FIRM
VanZ-like protein {ECO:0000313|EMBL:CDD27138.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_079_000M1_scaffold_249_26
unknown

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28026..28478
DNA (453bp) protein (151aa)

This feature has no annotations

L3_079_000M1_scaffold_249_27
unknown

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comp(28513..28842)
DNA (330bp) protein (110aa)

This feature has no annotations

L3_079_000M1_scaffold_249_28
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29242..29562
DNA (321bp) protein (107aa)
Transcriptional regulator PadR family n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N379_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDC02729.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
transcriptional regulator, PadR family
L3_079_000M1_scaffold_249_29
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29555..30814
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VGC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57162.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
Protein of unknown function (DUF2807).
L3_079_000M1_scaffold_249_30
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30863..33937)
DNA (3075bp) protein (1025aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A793_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX39055.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
Displaying items 1-30 of 69 in total

View Taxonomy