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L3_079_000M1_scaffold_261

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_261_1
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..295)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Coprococcus eutactus CAG:665 RepID=R5WKR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ93037.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
hypothetical protein
L3_079_000M1_scaffold_261_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(654..5186)
DNA (4533bp) protein (1511aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77743.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_261_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5173..5754)
DNA (582bp) protein (194aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAL3_9FIRM
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CCZ77742.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_261_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5776..6294)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2X1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77741.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_261_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6306..8495)
DNA (2190bp) protein (730aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77740.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_261_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8498..9628)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77739.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_261_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9653..10459)
DNA (807bp) protein (269aa)
Tfp pilus assembly protein PilO n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHJ9_9FIRM
Tfp pilus assembly protein PilO {ECO:0000313|EMBL:CCZ77738.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Tfp pilus assembly protein PilO
L3_079_000M1_scaffold_261_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10452..12215)
DNA (1764bp) protein (588aa)
Putative flagellar protein FliS n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAK7_9FIRM
Putative flagellar protein FliS {ECO:0000313|EMBL:CCZ77737.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
type IV pilus assembly protein PilM
L3_079_000M1_scaffold_261_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12456..13220)
DNA (765bp) protein (255aa)
type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2W7_9FIRM
Type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A {ECO:0000313|EMBL:CCZ77736.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_261_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13245..13763)
DNA (519bp) protein (173aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Roseburia sp. CAG:197 RepID=R5YCW9_9FIRM
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CDA25393.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
prepilin-type N-terminal cleavage/methylation domain
L3_079_000M1_scaffold_261_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13856..15067)
DNA (1212bp) protein (404aa)
Type II secretion system protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIB6_9FIRM
Type II secretion system protein {ECO:0000313|EMBL:CCZ77785.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
type II secretion system protein
L3_079_000M1_scaffold_261_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15082..16143)
DNA (1062bp) protein (354aa)
Twitching motility protein PilT n=1 Tax=Roseburia sp. CAG:18 RepID=R5V318_9FIRM
Twitching motility protein PilT {ECO:0000313|EMBL:CCZ77786.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
twitching motility protein PilT
L3_079_000M1_scaffold_261_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16175..17920)
DNA (1746bp) protein (582aa)
Type II secretion system protein E (GspE) n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAP3_9FIRM
Type II secretion system protein E (GspE) {ECO:0000313|EMBL:CCZ77787.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
type II secretion system protein E (GspE)
L3_079_000M1_scaffold_261_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18079..19371)
DNA (1293bp) protein (431aa)
stage IV sporulation protein B (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHP5_9FIRM
SpoIVB peptidase {ECO:0000313|EMBL:CCZ77788.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_261_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19427..21106)
DNA (1680bp) protein (560aa)
DNA repair protein RecN n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPS9_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA replication and repair protein RecN
L3_079_000M1_scaffold_261_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21140..21592)
DNA (453bp) protein (151aa)
Arginine repressor n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIB9_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcriptional regulator, ArgR family
L3_079_000M1_scaffold_261_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21610..22455)
DNA (846bp) protein (282aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V324_9FIRM
ATP-NAD kinase
L3_079_000M1_scaffold_261_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22456..23259)
DNA (804bp) protein (268aa)
Probable hemolysin n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAP9_9FIRM
Probable hemolysin {ECO:0000313|EMBL:CCZ77792.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hemolysin TlyA family protein
L3_079_000M1_scaffold_261_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23256..25124)
DNA (1869bp) protein (623aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHQ0_9FIRM
L3_079_000M1_scaffold_261_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25140..26033)
DNA (894bp) protein (298aa)
Geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPT5_9FIRM
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:CCZ77794.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_261_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26033..26254)
DNA (222bp) protein (74aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00198686};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Exonuclease VII small subunit. (EC:3.1.11.6)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIC3_9FIRM
L3_079_000M1_scaffold_261_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26247..27470)
DNA (1224bp) protein (408aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
exodeoxyribonuclease VII, large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5V330_9FIRM
L3_079_000M1_scaffold_261_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27467..27865)
DNA (399bp) protein (133aa)
N utilization substance protein B homolog n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAQ2_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcription antitermination factor NusB
L3_079_000M1_scaffold_261_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27948..28325)
DNA (378bp) protein (126aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHQ5_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCZ77798.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_261_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28398..29540)
DNA (1143bp) protein (381aa)
Glucose-1-phosphate adenylyltransferase GlgD subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPU0_9FIRM
Glucose-1-phosphate adenylyltransferase GlgD subunit {ECO:0000313|EMBL:CCZ77799.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glucose-1-phosphate adenylyltransferase, GlgD subunit
L3_079_000M1_scaffold_261_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29534..30745)
DNA (1212bp) protein (404aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIC9_9FIRM
L3_079_000M1_scaffold_261_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30840..32615)
DNA (1776bp) protein (592aa)
ABC transporter ATP-binding/permease protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V335_9FIRM
ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:CCZ77801.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC transporter ATP-binding protein/permease
L3_079_000M1_scaffold_261_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32627..34417)
DNA (1791bp) protein (597aa)
ABC transporter ATP-binding/permease protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAQ8_9FIRM
ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:CCZ77802.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC transporter ATP-binding protein/permease
L3_079_000M1_scaffold_261_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34556..35440
DNA (885bp) protein (295aa)
Transcriptional regulator AraC family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHR0_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ77803.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
AraC family transcriptional regulator
L3_079_000M1_scaffold_261_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35540..36499
DNA (960bp) protein (320aa)
Prophage Lp1 protein 65 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPU6_9FIRM
Prophage Lp1 protein 65 {ECO:0000313|EMBL:CCZ77804.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying items 1-30 of 62 in total

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