ggKbase home page

L3_079_000M1_scaffold_302

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_302_1
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

313..639
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GVC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29418.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
Predicted transcriptional regulators
L3_079_000M1_scaffold_302_2
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

661..1815
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUK3_9FIRM
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR02314.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
hypothetical protein
L3_079_000M1_scaffold_302_3
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(2158..5901)
DNA (3744bp) protein (1248aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EYG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02159.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
peptidase M14 carboxypeptidase A
L3_079_000M1_scaffold_302_4
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

6227..6682
DNA (456bp) protein (152aa)
Putative translation initiation factor IF-2 n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SMK6_9FIRM
Putative translation initiation factor IF-2 {ECO:0000313|EMBL:CCZ46172.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
putative hydrolase
L3_079_000M1_scaffold_302_5
unknown

Not on your lists

comp(7273..7503)
DNA (231bp) protein (77aa)

This feature has no annotations

L3_079_000M1_scaffold_302_6
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(7896..8729)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S6X2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46534.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_079_000M1_scaffold_302_7
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(8786..9754)
DNA (969bp) protein (323aa)
Putative oxidoreductase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RZA2_9FIRM
Putative oxidoreductase {ECO:0000313|EMBL:CCZ46535.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
putative oxidoreductase
L3_079_000M1_scaffold_302_8
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(9747..11342)
DNA (1596bp) protein (532aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0P3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72344.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_079_000M1_scaffold_302_9
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

11565..12956
DNA (1392bp) protein (464aa)
serine protease (EC:3.4.21.-)
Serine protease n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SL20_9FIRM
Serine protease {ECO:0000313|EMBL:CCZ45622.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L3_079_000M1_scaffold_302_10
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(13788..15236)
DNA (1449bp) protein (483aa)
pepD; Xaa-His dipeptidase (EC:3.4.13.3)
Xaa-His dipeptidase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SJA9_9FIRM
Xaa-His dipeptidase {ECO:0000313|EMBL:CCZ46816.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L3_079_000M1_scaffold_302_11
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(15256..16284)
DNA (1029bp) protein (343aa)
Rod shape-determining protein MreB n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SP98_9FIRM
Rod shape-determining protein MreB {ECO:0000313|EMBL:CCZ46787.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
mreB; rod shape-determining protein MreB
L3_079_000M1_scaffold_302_12
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(16605..17249)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SJ73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46786.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_079_000M1_scaffold_302_13
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(17246..19462)
DNA (2217bp) protein (739aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
Putative nuclease n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RZY0_9FIRM
putative nuclease
L3_079_000M1_scaffold_302_14

Not on your lists

comp(19472..19804)
DNA (333bp) protein (111aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SWM8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC62108.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_079_000M1_scaffold_302_15
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(19853..22678)
DNA (2826bp) protein (942aa)
UvrABC system protein A n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S158_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
uvrA; UvrABC system protein A
L3_079_000M1_scaffold_302_16
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(22750..23241)
DNA (492bp) protein (164aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SP95_9FIRM
putative cysteinyl-tRNA(Pro/Cys) deacylase
L3_079_000M1_scaffold_302_17
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(23275..24135)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RZX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46780.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_079_000M1_scaffold_302_18
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(24155..26125)
DNA (1971bp) protein (657aa)
UvrABC system protein B n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S7F9_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
uvrB; UvrABC system protein B
L3_079_000M1_scaffold_302_19
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(26115..26816)
DNA (702bp) protein (234aa)
Putative DNA repair protein radC n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S153_9FIRM
Putative DNA repair protein radC {ECO:0000313|EMBL:CCZ46778.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
radC; putative DNA repair protein radC
L3_079_000M1_scaffold_302_20
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(27157..27309)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AZS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX46247.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_079_000M1_scaffold_302_21
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27418..27579
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M319_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65360.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_079_000M1_scaffold_302_22
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27890..28501)
DNA (612bp) protein (204aa)
Formate/nitrite transporter superfamily protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BQV6_9CLOT
Formate/nitrite transporter family protein {ECO:0000313|EMBL:ETP72261.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
putative formate/nitrite transporter
L3_079_000M1_scaffold_302_23
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

28742..29506
DNA (765bp) protein (255aa)
exoA; exodeoxyribonuclease (EC:3.1.11.2)
Exodeoxyribonuclease n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SP89_9FIRM
Exodeoxyribonuclease {ECO:0000313|EMBL:CCZ46777.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L3_079_000M1_scaffold_302_24
unknown

Not on your lists

29503..29730
DNA (228bp) protein (76aa)

This feature has no annotations

L3_079_000M1_scaffold_302_25
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(30269..31180)
DNA (912bp) protein (304aa)
Jag protein homolog n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SJ63_9FIRM
Jag protein homolog {ECO:0000313|EMBL:CCZ46776.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
Jag protein homolog
L3_079_000M1_scaffold_302_26
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(31200..32309)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RZX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46775.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_079_000M1_scaffold_302_27
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(32341..32556)
DNA (216bp) protein (72aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S7F6_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_079_000M1_scaffold_302_28
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(32553..32897)
DNA (345bp) protein (115aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
rnpA; ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S148_9FIRM
L3_079_000M1_scaffold_302_29
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists


comp(33023..33163)
DNA (141bp) protein (47aa)
50S ribosomal protein L34 n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SP84_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
50S ribosomal protein L34
L3_079_000M1_scaffold_302_30
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

33569..34882
DNA (1314bp) protein (438aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SJ58_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
dnaA; chromosomal replication initiator protein DnaA
Displaying items 1-30 of 62 in total

View Taxonomy