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L3_079_000M1_scaffold_307

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_307_1
unknown

Not on your lists

2..205
DNA (204bp) protein (68aa)

This feature has no annotations

L3_079_000M1_scaffold_307_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(117..1424)
DNA (1308bp) protein (436aa)
Glycosyl hydrolase, family 57 n=3 Tax=Parabacteroides RepID=A7AC57_9PORP
Glycosyl hydrolase family 57 {ECO:0000313|EMBL:CDD14925.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
alpha-amylase
L3_079_000M1_scaffold_307_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1441..2727)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AZC4_9PORP
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CDD14924.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
4-alpha-glucanotransferase
L3_079_000M1_scaffold_307_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2724..4664)
DNA (1941bp) protein (647aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6ALQ7_9PORP
Putative glycogen debranching enzyme, archaeal type {ECO:0000313|EMBL:EDN87838.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_307_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4986..7076
DNA (2091bp) protein (697aa)
Peptidase family M3 n=2 Tax=Parabacteroides merdae RepID=A7AC53_9PORP
Peptidase family M3 {ECO:0000313|EMBL:EDN87836.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
peptidyl-dipeptidase
L3_079_000M1_scaffold_307_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7217..7651
DNA (435bp) protein (145aa)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XF15_9PORP
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:CDD14921.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
deoxycytidylate deaminase
L3_079_000M1_scaffold_307_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7663..9396
DNA (1734bp) protein (578aa)
Peptidase S41 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X040_9PORP
Peptidase S41 family {ECO:0000313|EMBL:CDD14920.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
carboxy-terminal processing protease
L3_079_000M1_scaffold_307_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9341..9856
DNA (516bp) protein (172aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Parabacteroides merdae RepID=K6AZB9_9PORP
5-formyltetrahydrofolate cyclo-ligase
L3_079_000M1_scaffold_307_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9858..10253)
DNA (396bp) protein (132aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AC49_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87832.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_307_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10269..10562)
DNA (294bp) protein (98aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AC48_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87831.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_307_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10559..11662)
DNA (1104bp) protein (368aa)
DNA replication and repair protein RecF n=3 Tax=Parabacteroides RepID=A7AC47_9PORP
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA replication and repair protein
L3_079_000M1_scaffold_307_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11798..12484
DNA (687bp) protein (229aa)
Tetratricopeptide repeat protein n=4 Tax=Parabacteroides RepID=A7AC46_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10327.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_000M1_scaffold_307_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12516..13043
DNA (528bp) protein (176aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
6,7-dimethyl-8-ribityllumazine synthase n=3 Tax=Parabacteroides RepID=A7AC45_9PORP
ribH; 6,7-dimethyl-8-ribityllumazine synthase
L3_079_000M1_scaffold_307_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13558..13881
DNA (324bp) protein (108aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AC42_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87825.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_307_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13878..14081)
DNA (204bp) protein (68aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AC41_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87824.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_307_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14510..14821)
DNA (312bp) protein (104aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AC40_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10323.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_000M1_scaffold_307_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14999..15370)
DNA (372bp) protein (124aa)
Preprotein translocase, SecG subunit n=3 Tax=Parabacteroides RepID=A7AC39_9PORP
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EDN87822.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
secG; preprotein translocase subunit SecG
L3_079_000M1_scaffold_307_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15378..16145)
DNA (768bp) protein (256aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AC38_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12221.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_307_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16148..16660)
DNA (513bp) protein (171aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AC37_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12222.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_307_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16664..17851)
DNA (1188bp) protein (396aa)
Sigma-54 interaction domain protein n=3 Tax=Parabacteroides RepID=A7AC36_9PORP
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EDN87819.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L3_079_000M1_scaffold_307_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17951..18778)
DNA (828bp) protein (276aa)
Acyltransferase n=3 Tax=Parabacteroides RepID=A7AC35_9PORP
Acyltransferase {ECO:0000313|EMBL:EDN87818.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hemolysin
L3_079_000M1_scaffold_307_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18785..19672)
DNA (888bp) protein (296aa)
CDP-alcohol phosphatidyltransferase n=3 Tax=Parabacteroides RepID=A7AC34_9PORP
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EDN87817.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_307_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19680..20411)
DNA (732bp) protein (244aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=2 Tax=Parabacteroides merdae RepID=A7AC33_9PORP
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EDN87816.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
short chain dehydrogenase/reductase family oxidoreductase
L3_079_000M1_scaffold_307_24
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20417..20887)
DNA (471bp) protein (157aa)
Glycerol-3-phosphate cytidylyltransferase n=7 Tax=Parabacteroides RepID=K5ZGE2_9PORP
Glycerol-3-phosphate cytidylyltransferase {ECO:0000313|EMBL:EKN13415.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
glycerol-3-phosphate cytidylyltransferase
L3_079_000M1_scaffold_307_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21199..22299)
DNA (1101bp) protein (367aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WM45_9PORP
4-hydroxythreonine-4-phosphate dehydrogenase
L3_079_000M1_scaffold_307_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22387..23418)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZ94_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12234.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_307_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23477..24508)
DNA (1032bp) protein (344aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Probable dual-specificity RNA methyltransferase RlmN n=2 Tax=Parabacteroides RepID=K6AYM8_9PORP
ribosomal RNA large subunit methyltransferase N
L3_079_000M1_scaffold_307_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24620..26758)
DNA (2139bp) protein (713aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
PPIC-type PPIASE domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WM50_9PORP
peptidyl-prolyl cis-trans isomerase
L3_079_000M1_scaffold_307_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26856..28112)
DNA (1257bp) protein (419aa)
Transporter associated domain protein n=3 Tax=Parabacteroides RepID=A7AC25_9PORP
Transporter associated domain protein {ECO:0000313|EMBL:EDN87808.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hemolysin
L3_079_000M1_scaffold_307_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28112..28852)
DNA (741bp) protein (247aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AC24_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87807.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
Displaying items 1-30 of 93 in total

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