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L3_079_000M1_scaffold_340

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_340_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

320..799
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BDH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57146.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_079_000M1_scaffold_340_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1074..1835
DNA (762bp) protein (254aa)
Mo-nitrogenase iron protein subunit NifH (EC:1.18.6.1)
Putative nitrogenase iron protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDT7_9FIRM
Putative nitrogenase iron protein {ECO:0000313|EMBL:CCZ78932.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_340_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1832..3112
DNA (1281bp) protein (427aa)
Oxidoreductase nitrogenase component 1 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V647_9FIRM
Oxidoreductase nitrogenase component 1 {ECO:0000313|EMBL:CCZ78931.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Nitrogenase molybdenum-iron protein, alpha and beta chains
L3_079_000M1_scaffold_340_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3117..4163
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78930.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Nitrogenase molybdenum-iron protein, alpha and beta chains
L3_079_000M1_scaffold_340_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4226..6556
DNA (2331bp) protein (777aa)
Carbamoyltransferase HypF n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTA3_9FIRM
Carbamoyltransferase HypF {ECO:0000313|EMBL:CCZ78929.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
[NiFe] hydrogenase maturation protein HypF
L3_079_000M1_scaffold_340_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6569..6778
DNA (210bp) protein (70aa)
Hydrogenase assembly chaperone HypC/HupF n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NX55_9FIRM
Hydrogenase assembly chaperone HypC/HupF {ECO:0000313|EMBL:ERK42665.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hydrogenase assembly chaperone HypC/HupF
L3_079_000M1_scaffold_340_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6778..7806
DNA (1029bp) protein (343aa)
Hydrogenase expression/formation protein HypD n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDT1_9FIRM
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:CCZ78927.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Hydrogenase maturation factor
L3_079_000M1_scaffold_340_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7826..8833
DNA (1008bp) protein (336aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Roseburia sp. CAG:18 RepID=R5V641_9FIRM
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:CCZ78926.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hydrogenase expression/formation protein HypE
L3_079_000M1_scaffold_340_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8850..9125
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78925.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_340_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9122..9931
DNA (810bp) protein (270aa)
Nitrogenase subunit NifH (ATPase) (EC:1.18.6.1)
Putative nitrogenase iron protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UT98_9FIRM
Putative nitrogenase iron protein {ECO:0000313|EMBL:CCZ78924.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_340_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9931..11268
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78923.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Nitrogenase component 1 type Oxidoreductase.
L3_079_000M1_scaffold_340_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11256..12374
DNA (1119bp) protein (373aa)
Nitrogenase molybdenum-iron protein alpha and beta chains n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDS6_9FIRM
Nitrogenase molybdenum-iron protein alpha and beta chains {ECO:0000313|EMBL:CCZ78922.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Nitrogenase molybdenum-iron protein, alpha and beta chains
L3_079_000M1_scaffold_340_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12748..14142
DNA (1395bp) protein (465aa)
Amino acid carrier protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULK1_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:CCZ78920.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
amino acid carrier protein
L3_079_000M1_scaffold_340_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14229..14669
DNA (441bp) protein (147aa)
YqeY-like protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UT94_9FIRM
YqeY-like protein {ECO:0000313|EMBL:CCZ78919.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_340_15
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14682..15773
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IT58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE53842.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
alcohol dehydrogenase
L3_079_000M1_scaffold_340_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15799..17517
DNA (1719bp) protein (573aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77609.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Methyl-accepting chemotaxis protein
L3_079_000M1_scaffold_340_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17558..19087
DNA (1530bp) protein (510aa)
Na+/H+ antiporter family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX2_9FIRM
Na+/H+ antiporter family protein {ECO:0000313|EMBL:CCZ77610.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transporter, NhaC family (TC 2.A.35)
L3_079_000M1_scaffold_340_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19336..20142)
DNA (807bp) protein (269aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2J5_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:CCZ77611.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_340_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20353..21369
DNA (1017bp) protein (339aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glyceraldehyde-3-phosphate dehydrogenase type I n=1 Tax=Roseburia sp. CAG:18 RepID=R5VA94_9FIRM
glyceraldehyde-3-phosphate dehydrogenase, type I
L3_079_000M1_scaffold_340_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21557..22780
DNA (1224bp) protein (408aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphoglycerate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UH79_9FIRM
phosphoglycerate kinase
L3_079_000M1_scaffold_340_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22822..23568
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=2 Tax=environmental samples RepID=R5UPC0_9FIRM
L3_079_000M1_scaffold_340_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23638..25149
DNA (1512bp) protein (504aa)
Capsule synthesis protein CapA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX5_9FIRM
Capsule synthesis protein CapA {ECO:0000313|EMBL:CCZ77615.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
capsule synthesis protein CapA
L3_079_000M1_scaffold_340_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25253..26794
DNA (1542bp) protein (514aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2J9_9FIRM
phosphoglyceromutase
L3_079_000M1_scaffold_340_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26814..27689
DNA (876bp) protein (292aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VA97_9FIRM
phosphoribosylaminoimidazole-succinocarboxamide synthase
L3_079_000M1_scaffold_340_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27705..29177
DNA (1473bp) protein (491aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Amidophosphoribosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UH84_9FIRM
amidophosphoribosyltransferase
L3_079_000M1_scaffold_340_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29214..30665
DNA (1452bp) protein (484aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPC5_9FIRM
L3_079_000M1_scaffold_340_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30796..32166
DNA (1371bp) protein (457aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX9_9FIRM
L3_079_000M1_scaffold_340_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32161..33141)
DNA (981bp) protein (327aa)
Fimbrial assembly protein PilC n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2K2_9FIRM
Fimbrial assembly protein PilC {ECO:0000313|EMBL:CCZ77621.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Type II secretory pathway, component PulF
L3_079_000M1_scaffold_340_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33346..33585
DNA (240bp) protein (80aa)
Preprotein translocase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UH87_9FIRM
Preprotein translocase {ECO:0000313|EMBL:CCZ77623.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
preprotein translocase subunit SecG
L3_079_000M1_scaffold_340_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33652..35784
DNA (2133bp) protein (711aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPC9_9FIRM
Displaying items 1-30 of 53 in total

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