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L3_079_000M1_scaffold_343

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_343_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..5472
DNA (5472bp) protein (1824aa)
Putative cell surface protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TMY2_9FIRM
Putative cell surface protein {ECO:0000313|EMBL:CCZ64694.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_343_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5559..9257
DNA (3699bp) protein (1233aa)
Dockerin type I repeat-containing domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PRZ0_9FIRM
Dockerin type I repeat-containing domain protein {ECO:0000313|EMBL:ERK46534.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
type 1 dockerin
L3_079_000M1_scaffold_343_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9337..10584
DNA (1248bp) protein (416aa)
Cohesin domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QZ13_9FIRM
Cohesin domain protein {ECO:0000313|EMBL:ERK46533.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
polysaccharide lyase family 1-like pectate lyase
L3_079_000M1_scaffold_343_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10741..13014
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R765_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK46532.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_079_000M1_scaffold_343_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13102..14037
DNA (936bp) protein (312aa)
MoxR-like ATPases (EC:3.6.3.-)
ATPase family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PQZ5_9FIRM
ATPase family protein {ECO:0000313|EMBL:ERK46531.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_079_000M1_scaffold_343_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14050..15219
DNA (1170bp) protein (390aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64689.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_343_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15292..17706
DNA (2415bp) protein (805aa)
Transglutaminase-like protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PRY7_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:ERK46529.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_079_000M1_scaffold_343_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17730..22691
DNA (4962bp) protein (1654aa)
Putative glug n=1 Tax=Roseburia sp. CAG:50 RepID=R5U6L8_9FIRM
Putative glug {ECO:0000313|EMBL:CCZ64687.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_343_9
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22795..24180
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R762_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK46527.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_079_000M1_scaffold_343_10
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24226..24840
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2PQZ0_9FIRM
Putative lipoprotein {ECO:0000313|EMBL:CCZ64685.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_343_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24837..25718
DNA (882bp) protein (294aa)
Cobalt transport protein n=2 Tax=Clostridiales RepID=U2P7R5_9FIRM
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCZ64684.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
cobalt ABC transporter permease CbiQ
L3_079_000M1_scaffold_343_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25691..27424
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TG64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64683.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ATPase component of various ABC-type transport systems
L3_079_000M1_scaffold_343_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27428..28120
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U6L2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64682.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_343_14
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28354..29568
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=2 Tax=Clostridiales RepID=R5U0K7_9FIRM
L3_079_000M1_scaffold_343_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29737..31566)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TG74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64680.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_079_000M1_scaffold_343_16
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31944..32540
DNA (597bp) protein (199aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMX0_9FIRM
Single-strand binding family protein {ECO:0000313|EMBL:ERK46519.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
single-stranded DNA-binding protein
L3_079_000M1_scaffold_343_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32682..33173
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QZ03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK46518.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
BtuR; ATP:corrinoid adenosyltransferase
L3_079_000M1_scaffold_343_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33607..34494
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Clostridiales RepID=R5U6K8_9FIRM
hypothetical protein
L3_079_000M1_scaffold_343_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34571..35335
DNA (765bp) protein (255aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Clostridiales RepID=R5U0K1_9FIRM
hypothetical protein
L3_079_000M1_scaffold_343_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35370..37340
DNA (1971bp) protein (657aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Fructose-1,6-bisphosphatase class 3 n=2 Tax=Clostridiales RepID=R5TG70_9FIRM
hypothetical protein
L3_079_000M1_scaffold_343_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37575..38213
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TMW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64674.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Transcriptional regulators
L3_079_000M1_scaffold_343_22
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38264..40591
DNA (2328bp) protein (776aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R749_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK46512.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ABC-type multidrug transport system, ATPase and permease components
L3_079_000M1_scaffold_343_23
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40632..42431
DNA (1800bp) protein (600aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PQX7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK46511.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ABC-type multidrug transport system, ATPase and permease components
L3_079_000M1_scaffold_343_24
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42704..44038)
DNA (1335bp) protein (445aa)
MATE efflux family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P7Q2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CCZ64671.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
MatE efflux family protein
L3_079_000M1_scaffold_343_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44415..45425)
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
aspartate--ammonia ligase, AsnA-type (EC:6.3.1.1)
Aspartate--ammonia ligase n=2 Tax=Clostridiales RepID=R5TQQ4_9FIRM
L3_079_000M1_scaffold_343_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45609..46217
DNA (609bp) protein (203aa)
HD domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P7Y0_9FIRM
HD domain protein {ECO:0000313|EMBL:ERK46605.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hydrolases of HD superfamily
L3_079_000M1_scaffold_343_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46319..47251
DNA (933bp) protein (311aa)
Amidohydrolase 2 n=2 Tax=Clostridiales RepID=R5U3A9_9FIRM
Amidohydrolase 2 {ECO:0000313|EMBL:CCZ65631.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative metal-dependent hydrolase of the TIM-barrel fold protein
L3_079_000M1_scaffold_343_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47429..48370
DNA (942bp) protein (314aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L-lactate dehydrogenase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QZ73_9FIRM
L-lactate dehydrogenase
L3_079_000M1_scaffold_343_29
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

48510..49217
DNA (708bp) protein (236aa)
Hydrolase, NUDIX family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R7C9_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:ERK46602.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
NUDIX domain.
L3_079_000M1_scaffold_343_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49438..50118
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=2 Tax=Clostridiales RepID=R5TQQ9_9FIRM
Displaying items 1-30 of 41 in total

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