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L3_079_000M1_scaffold_379

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_379_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(140..628)
DNA (489bp) protein (163aa)
DNA protection during starvation protein n=4 Tax=Parabacteroides RepID=A7AFI5_9PORP
DNA protection during starvation protein {ECO:0000313|EMBL:EDN86811.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
non-specific DNA-binding protein Dps
L3_079_000M1_scaffold_379_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1004..1930
DNA (927bp) protein (309aa)
LysR substrate binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AFI8_9PORP
LysR substrate binding domain protein {ECO:0000313|EMBL:EDN86814.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
redox-sensitive transcriptional activator OxyR
L3_079_000M1_scaffold_379_3
unknown

Not on your lists

1997..2113
DNA (117bp) protein (39aa)

This feature has no annotations

L3_079_000M1_scaffold_379_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2317..3162
DNA (846bp) protein (282aa)
Prephenate dehydratase {ECO:0000313|EMBL:EEC97443.1}; EC=4.2.1.51 {ECO:0000313|EMBL:EEC97443.1};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Prephenate dehydratase n=6 Tax=Parabacteroides RepID=A7AFJ0_9PORP
prephenate dehydratase
L3_079_000M1_scaffold_379_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3137..4324
DNA (1188bp) protein (396aa)
Aminotransferase class I/II n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WV84_9PORP
Aminotransferase class I/II {ECO:0000313|EMBL:CDD13230.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
aminotransferase
L3_079_000M1_scaffold_379_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4412..5482
DNA (1071bp) protein (357aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=3 Tax=Parabacteroides RepID=K6B657_9PORP
Putative 3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:EDN86818.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phospho-2-dehydro-3-deoxyheptonate aldolase
L3_079_000M1_scaffold_379_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5593..6366
DNA (774bp) protein (258aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6C5F3_9PORP
Putative prephenate dehydrogenase {ECO:0000313|EMBL:EDN86819.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
chorismate mutase/prephenate dehydratase
L3_079_000M1_scaffold_379_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6494..7042
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPL8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13233.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_379_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7174..9252
DNA (2079bp) protein (693aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA topoisomerase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X262_9PORP
DNA topoisomerase
L3_079_000M1_scaffold_379_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9367..9858
DNA (492bp) protein (164aa)
Putative isopentenyl-diphosphate delta-isomerase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WV88_9PORP
Putative isopentenyl-diphosphate delta-isomerase {ECO:0000313|EMBL:CDD13235.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
NTP pyrophosphohydrolase
L3_079_000M1_scaffold_379_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9879..11054
DNA (1176bp) protein (392aa)
5-aminoimidazole-4-carboxamide ribonucleotide transformylase (EC:2.1.2.3)
AICARFT/IMPCHase bienzyme n=2 Tax=Parabacteroides merdae RepID=A7AFJ9_9PORP
AICARFT/IMPCHase bienzyme {ECO:0000313|EMBL:EDN86825.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_079_000M1_scaffold_379_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11354..12148)
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFK0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86826.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_379_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12247..13179
DNA (933bp) protein (311aa)
Tat pathway signal sequence domain protein n=3 Tax=Parabacteroides RepID=A7AFK1_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDD13389.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_000M1_scaffold_379_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13179..14768
DNA (1590bp) protein (530aa)
Tat pathway signal sequence domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFK2_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EDN86828.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ferredoxin-type protein
L3_079_000M1_scaffold_379_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14842..15972
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Queuine tRNA-ribosyltransferase n=4 Tax=Parabacteroides RepID=A7AFK3_9PORP
tRNA-guanine transglycosylase
L3_079_000M1_scaffold_379_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15985..17070
DNA (1086bp) protein (362aa)
Permease, YjgP/YjgQ family n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFK4_9PORP
Permease, YjgP/YjgQ family {ECO:0000313|EMBL:EDN86830.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_379_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17288..17434)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNF4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12773.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_379_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17636..17917)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X0S7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12774.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_000M1_scaffold_379_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17975..19006)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFK8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86834.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_379_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19166..20533)
DNA (1368bp) protein (456aa)
Outer membrane efflux protein n=2 Tax=Parabacteroides merdae RepID=A7AFK9_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN86835.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane efflux protein
L3_079_000M1_scaffold_379_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20533..23661)
DNA (3129bp) protein (1043aa)
RND transporter, HAE1/HME family, permease protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFL0_9PORP
RND transporter, HAE1/HME family, permease protein {ECO:0000313|EMBL:EDN86836.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
multidrug transporter AcrB
L3_079_000M1_scaffold_379_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23661..24728)
DNA (1068bp) protein (356aa)
Efflux transporter RND family MFP subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNF9_9PORP
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD12778.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
lipoprotein
L3_079_000M1_scaffold_379_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25080..28946
DNA (3867bp) protein (1289aa)
F5/8 type C domain protein n=2 Tax=Parabacteroides merdae RepID=A7AFL2_9PORP
F5/8 type C domain protein {ECO:0000313|EMBL:EDN86838.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative glycosyl hydrolase
L3_079_000M1_scaffold_379_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29110..30774
DNA (1665bp) protein (555aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01659, ECO:0000256|SAAS:SAAS00056887}; Short=SEPHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01659};; EC=2.2.1.9 {ECO:0000256|HAMAP-Rule:MF_01659, ECO:0000256|SAAS:SAAS00056850};; Menaquinone biosynthesis protein MenD {ECO:0000256|HAMAP-Rule:MF_01659}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=2 Tax=Parabacteroides merdae RepID=A7AFL3_9PORP
2-oxoglutarate decarboxylase
L3_079_000M1_scaffold_379_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30812..31636
DNA (825bp) protein (275aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
naphthoate synthase (EC:4.1.3.36)
Naphthoate synthase n=5 Tax=Parabacteroides RepID=A7AFL4_9PORP
L3_079_000M1_scaffold_379_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31649..32698
DNA (1050bp) protein (350aa)
O-succinylbenzoate synthase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZFT8_9PORP
Putative o-succinylbenzoate synthase {ECO:0000313|EMBL:EDN86841.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative muconate cycloisomerase
L3_079_000M1_scaffold_379_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32673..33788
DNA (1116bp) protein (372aa)
O-succinylbenzoic acid--CoA ligase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNG3_9PORP
O-succinylbenzoic acid--CoA ligase {ECO:0000313|EMBL:CDD12783.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
O-succinylbenzoate--CoA ligase
L3_079_000M1_scaffold_379_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33842..35809
DNA (1968bp) protein (656aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFL7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86843.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_000M1_scaffold_379_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35854..37548
DNA (1695bp) protein (565aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YL75_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN14557.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_000M1_scaffold_379_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37583..37711)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X8V7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12786.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Displaying items 1-30 of 74 in total

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