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L3_079_000M1_scaffold_444

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_444_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..207)
DNA (207bp) protein (69aa)
Methyltransferase domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z571_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:CDD35996.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L3_079_000M1_scaffold_444_2
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(304..1209)
DNA (906bp) protein (302aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B7A1E2
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CCY61426.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
dTDP-glucose 4,6-dehydratase
L3_079_000M1_scaffold_444_3
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1223..2917)
DNA (1695bp) protein (565aa)
Putative benzoyl-CoA reductase, subunit A n=2 Tax=Coprococcus RepID=C0B7Q7_9FIRM
Putative benzoyl-CoA reductase subunit A {ECO:0000313|EMBL:CDB84605.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
CoA-substrate-specific enzyme activase, putative
L3_079_000M1_scaffold_444_4
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2898..4184)
DNA (1287bp) protein (429aa)
2-hydroxyglutaryl-CoA dehydratase, D-component n=1 Tax=Blautia sp. KLE 1732 RepID=U2EUM6_9FIRM
2-hydroxyglutaryl-CoA dehydratase, D-component {ECO:0000313|EMBL:ERI96761.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
L3_079_000M1_scaffold_444_5
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4439..4597)
DNA (159bp) protein (53aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T3W0_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97247.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_079_000M1_scaffold_444_6
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4785..6371
DNA (1587bp) protein (529aa)
protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB87_9FIRM
Putative serine/threonine protein kinase {ECO:0000313|EMBL:CDA24818.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L3_079_000M1_scaffold_444_7
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6484..6894
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z7P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24817.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
helix-turn-helix domain protein
L3_079_000M1_scaffold_444_8
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6986..10120)
DNA (3135bp) protein (1045aa)
Putative listeria/Bacterioides repeat-containing domain protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YTN1_9FIRM
Putative listeria/Bacterioides repeat-containing domain protein {ECO:0000313|EMBL:CDA24816.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
nucleic acid binding OB-fold tRNA/helicase-type
L3_079_000M1_scaffold_444_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10360..11544)
DNA (1185bp) protein (395aa)
Probable hydroxymethylpyrimidine transporter CytX n=1 Tax=Roseburia sp. CAG:18 RepID=R5UM17_9FIRM
Probable hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:CCZ79075.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
probable hydroxymethylpyrimidine transporter CytX
L3_079_000M1_scaffold_444_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11541..12341)
DNA (801bp) protein (267aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CBL11709.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CBL11709.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phosphomethylpyrimidine kinase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7J3_9FIRM
L3_079_000M1_scaffold_444_11
unknown

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comp(12735..14408)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P4S7_9CLOT
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
Uncharacterized protein {ECO:0000313|EMBL:CBL39043.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_079_000M1_scaffold_444_12
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14531..14830)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HEA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE36537.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L3_079_000M1_scaffold_444_13
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15137..16141)
DNA (1005bp) protein (335aa)
Arabinogalactan endo-beta-1,4-galactanase {ECO:0000256|RuleBase:RU361192}; EC=3.2.1.89 {ECO:0000256|RuleBase:RU361192};; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
Arabinogalactan endo-1 4-beta-galactosidase n=1 Tax=Blautia sp. CAG:37 RepID=R7JQ65_9FIRM
diguanylate cyclase (GGDEF) domain
L3_079_000M1_scaffold_444_14
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16157..17206)
DNA (1050bp) protein (350aa)
arabinogalactan endo-1,4-beta-galactosidase (EC:3.2.1.89)
Arabinogalactan endo-beta-1,4-galactanase {ECO:0000256|RuleBase:RU361192}; EC=3.2.1.89 {ECO:0000256|RuleBase:RU361192};; Flags: Precursor;; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
Arabinogalactan endo-1,4-beta-galactosidase n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CZ52_PAESJ
L3_079_000M1_scaffold_444_15
Treponema succinifaciens, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(17222..20068)
DNA (2847bp) protein (949aa)
arabinogalactan endo-1,4-beta-galactosidase (EC:3.2.1.89)
Arabinogalactan endo-beta-1,4-galactanase {ECO:0000256|RuleBase:RU361192}; EC=3.2.1.89 {ECO:0000256|RuleBase:RU361192};; TaxID=869209 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091).;"
Arabinogalactan endo-1,4-beta-galactosidase n=1 Tax=Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) RepID=F2NSS9_TRES6
L3_079_000M1_scaffold_444_16
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20070..21083)
DNA (1014bp) protein (338aa)
transcriptional regulator, LacI family (EC:5.1.1.1)
Transcriptional regulator LacI family n=1 Tax=Coprococcus sp. CAG:131 RepID=R6L891_9FIRM
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDB79739.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
L3_079_000M1_scaffold_444_17
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21111..22712)
DNA (1602bp) protein (534aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5R5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42595.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
sugar ABC transporter substrate-binding protein
L3_079_000M1_scaffold_444_18
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22748..23635)
DNA (888bp) protein (296aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5R6_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN42596.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ABC transporter permease subunit
L3_079_000M1_scaffold_444_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23645..24556)
DNA (912bp) protein (304aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5R7_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN42597.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
lplB3; protein LplB
L3_079_000M1_scaffold_444_20
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24696..25652)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YBQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24983.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L3_079_000M1_scaffold_444_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25883..26197)
DNA (315bp) protein (105aa)
Putative aliphatic sulfonates transport permease protein SsuC n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5V6_9FIRM
Putative aliphatic sulfonates transport permease protein SsuC {ECO:0000313|EMBL:ERJ97114.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_079_000M1_scaffold_444_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26210..26992)
DNA (783bp) protein (261aa)
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KF28_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERJ97116.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ABC transporter
L3_079_000M1_scaffold_444_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27404..27925
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8U1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79871.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_444_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27912..28550)
DNA (639bp) protein (213aa)
Entner-Doudoroff aldolase (EC:4.1.2.14 4.1.3.16)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79872.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_079_000M1_scaffold_444_25
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28568..29035)
DNA (468bp) protein (156aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Kinase, PfkB family n=1 Tax=Blautia sp. KLE 1732 RepID=U2EF29_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:ERI93137.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L3_079_000M1_scaffold_444_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29470..31311)
DNA (1842bp) protein (614aa)
Glycosyl hydrolase family 25 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3C2_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CCZ77896.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L3_079_000M1_scaffold_444_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31336..32643)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VB01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77897.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_079_000M1_scaffold_444_28
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32589..33227)
DNA (639bp) protein (213aa)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
adenylylsulfate kinase ApsK (EC:2.7.7.4 2.7.1.25)
Adenylyl-sulfate kinase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YJR0_9FIRM
L3_079_000M1_scaffold_444_29
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33242..34411)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YBL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24943.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L3_079_000M1_scaffold_444_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34611..35294
DNA (684bp) protein (228aa)
DNA-binding response regulator DltR n=1 Tax=Roseburia sp. CAG:18 RepID=R5V439_9FIRM
DNA-binding response regulator DltR {ECO:0000313|EMBL:CCZ78206.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
dltR; transcriptional regulatory protein DltR
Displaying items 1-30 of 46 in total

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