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L3_079_000M1_scaffold_488

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_488_1
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1082..2185
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BQI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA63249.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
methyltransferase, FkbM family
L3_079_000M1_scaffold_488_2
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2360..3280
DNA (921bp) protein (307aa)
TIGR00255 family protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJ63_9CLOT
TIGR00255 family protein {ECO:0000313|EMBL:CDA63250.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
conserved hypothetical protein TIGR00255
L3_079_000M1_scaffold_488_3
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3296..3583
DNA (288bp) protein (96aa)
UPF0296 protein BN513_00095 n=1 Tax=Clostridium sp. CAG:169 RepID=R6BVR7_9CLOT
UPF0296 protein BN513_00095 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L3_079_000M1_scaffold_488_4
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3576..4184
DNA (609bp) protein (203aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6CD69_9CLOT
L3_079_000M1_scaffold_488_5
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4177..4410
DNA (234bp) protein (78aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Clostridium sp. CAG:169 RepID=R6BG42_9CLOT
DNA-directed RNA polymerase, omega subunit
L3_079_000M1_scaffold_488_6
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4532..6955
DNA (2424bp) protein (808aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
primosomal protein N' (EC:3.6.1.-)
Primosomal protein N n=1 Tax=Clostridium sp. CAG:169 RepID=R6BQI9_9CLOT
L3_079_000M1_scaffold_488_7
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6994..7467
DNA (474bp) protein (158aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJ67_9CLOT
L3_079_000M1_scaffold_488_8
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7489..8409
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
fmt; Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CW53_9CLOT
L3_079_000M1_scaffold_488_9
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8533..9228
DNA (696bp) protein (232aa)
Neutral zinc metallopeptidase family protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJI6_9CLOT
Neutral zinc metallopeptidase family protein {ECO:0000313|EMBL:CDA60944.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
peptidase, membrane zinc metallopeptidase
L3_079_000M1_scaffold_488_10
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9306..10640
DNA (1335bp) protein (445aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium sp. CAG:242 RepID=R6DGP7_9CLOT
L3_079_000M1_scaffold_488_11
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10641..11732
DNA (1092bp) protein (364aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium sp. CAG:242 RepID=R6CZL0_9CLOT
L3_079_000M1_scaffold_488_12
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11729..12463
DNA (735bp) protein (245aa)
Protein phosphatase 2C n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCB8_9CLOT
Protein phosphatase 2C {ECO:0000313|EMBL:CDA61843.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
protein serine/threonine phosphatase
L3_079_000M1_scaffold_488_13
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12491..14602
DNA (2112bp) protein (704aa)
Kinase domain protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLN1_9CLOT
Kinase domain protein {ECO:0000313|EMBL:CDA61844.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
serine/threonine protein kinase with PASTA sensor(s)
L3_079_000M1_scaffold_488_14
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14751..15653
DNA (903bp) protein (301aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
rsgA; ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFA1_9CLOT
L3_079_000M1_scaffold_488_15
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15685..16320
DNA (636bp) protein (212aa)
Thiamine diphosphokinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRU9_9CLOT
Thiamine diphosphokinase {ECO:0000313|EMBL:CDA61846.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
thiamine pyrophosphokinase
L3_079_000M1_scaffold_488_16
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16555..17505
DNA (951bp) protein (317aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
prmA; Ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Clostridium sp. CAG:169 RepID=R6C906_9CLOT
L3_079_000M1_scaffold_488_17
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17518..18243
DNA (726bp) protein (242aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCC2_9CLOT
hypothetical protein
L3_079_000M1_scaffold_488_18
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18268..19116
DNA (849bp) protein (283aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLN6_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDA61849.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
L3_079_000M1_scaffold_488_19
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19143..19802
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61850.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
L3_079_000M1_scaffold_488_20
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19750..19947
DNA (198bp) protein (66aa)
UPF0291 protein BN513_01569 n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRV4_9CLOT
UPF0291 protein BN513_01569 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L3_079_000M1_scaffold_488_21
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20001..21674
DNA (1674bp) protein (558aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
2-isopropylmalate synthase n=1 Tax=Clostridium sp. CAG:169 RepID=R6C911_9CLOT
2-isopropylmalate synthase
L3_079_000M1_scaffold_488_22
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21720..22274)
DNA (555bp) protein (185aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCC6_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CDA61853.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
sigma 54 modulation protein/ribosomal protein S30EA
L3_079_000M1_scaffold_488_23
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22410..23531)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61854.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
conserved hypothetical protein
L3_079_000M1_scaffold_488_24
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23932..24978
DNA (1047bp) protein (349aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Polyamine ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFB0_9CLOT
spermidine/putrescine transport ATP-binding protein potA
L3_079_000M1_scaffold_488_25
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24983..25825
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61856.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
ABC-type spermidine/putrescine transport system, permease component I
L3_079_000M1_scaffold_488_26
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25822..26649
DNA (828bp) protein (276aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium sp. CAG:169 RepID=R6C915_9CLOT
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDA61857.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
potC; spermidine/putrescine transport transport ATP-binding protein PotC
L3_079_000M1_scaffold_488_27
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26649..27929
DNA (1281bp) protein (427aa)
ABC transporter solute-binding protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCD0_9CLOT
ABC transporter solute-binding protein {ECO:0000313|EMBL:CDA61858.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
spermidine/putrescine transport ATP-binding protein PotD
L3_079_000M1_scaffold_488_28
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28096..28416
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61859.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
TfoX domain family protein
L3_079_000M1_scaffold_488_29
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28437..29039
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61860.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L3_079_000M1_scaffold_488_30
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29115..31730)
DNA (2616bp) protein (872aa)
Putative calcium-translocating P-type ATPase PMCA-type n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRW3_9CLOT
Putative calcium-translocating P-type ATPase PMCA-type {ECO:0000313|EMBL:CDA61861.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
cation transporting ATPase-like protein
Displaying items 1-30 of 51 in total

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