ggKbase home page

L3_079_000M1_scaffold_492

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_492_1
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(191..2056)
DNA (1866bp) protein (622aa)
Uncharacterized protein conserved in bacteria n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU70_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL41362.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
hypothetical protein
L3_079_000M1_scaffold_492_2
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2173..3102)
DNA (930bp) protein (310aa)
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491, ECO:0000313|EMBL:CBL41363.1};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491, ECO:0000313|EMBL:CBL41363.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU71_9FIRM
L3_079_000M1_scaffold_492_3
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3104..4006)
DNA (903bp) protein (301aa)
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000313|EMBL:CBL41364.1}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
tRNA pseudouridine synthase B n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU72_9FIRM
L3_079_000M1_scaffold_492_4
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4025..4987)
DNA (963bp) protein (321aa)
Exopolyphosphatase-related proteins n=1 Tax=Clostridium sp. CAG:81 RepID=R5G2X6_9CLOT
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CCY11463.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Exopolyphosphatase-related proteins
L3_079_000M1_scaffold_492_5
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5132..5527)
DNA (396bp) protein (132aa)
Ribosome-binding factor A n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU73_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_6
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5553..8456)
DNA (2904bp) protein (968aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium sp. CAG:81 RepID=R5G6E3_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
translation initiation factor IF-2
L3_079_000M1_scaffold_492_7
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8467..8778)
DNA (312bp) protein (104aa)
Ribosomal protein HS6-type (S12/L30/L7a) n=2 Tax=Clostridiales RepID=D7GU74_9FIRM
Ribosomal protein HS6-type (S12/L30/L7a)
Ribosomal protein HS6-type (S12/L30/L7a) {ECO:0000313|EMBL:CBL41366.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_8
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8765..9046)
DNA (282bp) protein (94aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Clostridium sp. CAG:81 RepID=R5G2A8_9CLOT
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CCY11455.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_079_000M1_scaffold_492_9
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9067..10218)
DNA (1152bp) protein (384aa)
Transcription termination factor NusA n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU75_9FIRM
transcription termination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_10
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10249..10716)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU76_9FIRM
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_11
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11107..14049
DNA (2943bp) protein (981aa)
Small GTP-binding protein domain n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU77_9FIRM
small GTP-binding protein domain
Small GTP-binding protein domain {ECO:0000313|EMBL:CBL41369.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_12
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14553..15071)
DNA (519bp) protein (173aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G6D2_9CLOT
L3_079_000M1_scaffold_492_13
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15369..16358
DNA (990bp) protein (330aa)
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Shikimate dehydrogenase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU81_9FIRM
L3_079_000M1_scaffold_492_14
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16560..17309)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU82_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL41374.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_15
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17327..17887)
DNA (561bp) protein (187aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU83_9FIRM
RNA polymerase, sigma subunit, ECF family
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:CBL41375.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_16
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18185..18778)
DNA (594bp) protein (198aa)
Acyl carrier protein phosphodiesterase (EC:1.7.-.-)
Acyl carrier protein phosphodiesterase {ECO:0000313|EMBL:CBL41376.1}; EC=1.7.-.- {ECO:0000313|EMBL:CBL41376.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Acyl carrier protein phosphodiesterase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU84_9FIRM
L3_079_000M1_scaffold_492_17
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18815..19675)
DNA (861bp) protein (287aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G6C7_9CLOT
L3_079_000M1_scaffold_492_18
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20187..20768
DNA (582bp) protein (194aa)
LSU ribosomal protein L25P n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU86_9FIRM
LSU ribosomal protein L25P
General stress protein CTC {ECO:0000256|SAAS:SAAS00023360}; 50S ribosomal protein L25 {ECO:0000256|SAAS:SAAS00023358}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_19
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20922..22529
DNA (1608bp) protein (536aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBL41379.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_079_000M1_scaffold_492_20
unknown

Not on your lists

22740..22952
DNA (213bp) protein (71aa)

This feature has no annotations

L3_079_000M1_scaffold_492_21
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22907..23269)
DNA (363bp) protein (121aa)
Lactoylglutathione lyase and related lyases n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU88_9FIRM
Lactoylglutathione lyase and related lyases
Lactoylglutathione lyase and related lyases {ECO:0000313|EMBL:CBL41380.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_22
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23271..23750)
DNA (480bp) protein (160aa)
Predicted flavin-nucleotide-binding protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GU89_9FIRM
Predicted flavin-nucleotide-binding protein
Predicted flavin-nucleotide-binding protein {ECO:0000313|EMBL:CBL41381.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_492_23
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24031..24888
DNA (858bp) protein (286aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5GF54_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CCY11437.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_079_000M1_scaffold_492_24
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25030..26157)
DNA (1128bp) protein (376aa)
MATE efflux family protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AFM9_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CDD59608.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
putative efflux protein, MATE family
L3_079_000M1_scaffold_492_25
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26179..26370)
DNA (192bp) protein (64aa)
MATE efflux family protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AFM9_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CDD59608.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
MATE efflux family protein
L3_079_000M1_scaffold_492_26
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26370..26813)
DNA (444bp) protein (148aa)
MarR-family transcriptional regulator n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5U4_9CLOT
MarR-family transcriptional regulator {ECO:0000313|EMBL:CDD59606.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
putative MarR family transcriptional regulator
L3_079_000M1_scaffold_492_27
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27068..30973
DNA (3906bp) protein (1302aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R9J126_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS27829.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
L3_079_000M1_scaffold_492_28
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31140..32066)
DNA (927bp) protein (309aa)
ABC-type transport system involved in Fe-S cluster assembly permease component n=1 Tax=Clostridium sp. CAG:81 RepID=R5G283_9CLOT
ABC-type transport system involved in Fe-S cluster assembly permease component {ECO:0000313|EMBL:CCY11435.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_079_000M1_scaffold_492_29
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32066..32770)
DNA (705bp) protein (235aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G2U0_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY11433.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
ABC transporter ATP-binding protein
L3_079_000M1_scaffold_492_30
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33142..34506
DNA (1365bp) protein (455aa)
Transporter n=1 Tax=Clostridium sp. CAG:81 RepID=R5GFX6_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Na+-dependent transporters of the SNF family
Displaying items 1-30 of 43 in total

View Taxonomy