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L3_079_000M1_scaffold_2056

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_2056_1
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..386)
DNA (384bp) protein (128aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
dTDP-glucose 4,6-dehydratase n=4 Tax=Clostridiales RepID=D4N169_9FIRM
L3_079_000M1_scaffold_2056_2
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(397..1182)
DNA (786bp) protein (262aa)
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Glucose-1-phosphate thymidylyltransferase n=4 Tax=Clostridiales RepID=D4N168_9FIRM
L3_079_000M1_scaffold_2056_3
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1309..1863)
DNA (555bp) protein (185aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=3 Tax=Lachnospiraceae RepID=L1PYY7_9FIRM
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EKY20670.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_079_000M1_scaffold_2056_4
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1903..2748)
DNA (846bp) protein (282aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EDS22990.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EDS22990.1};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
dTDP-4-dehydrorhamnose reductase n=3 Tax=Clostridiales RepID=D4N166_9FIRM
L3_079_000M1_scaffold_2056_5
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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comp(2817..3998)
DNA (1182bp) protein (394aa)
Methyltransferase domain-containing protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C3B7_9FIRM
Methyltransferase domain-containing protein {ECO:0000313|EMBL:CDD71818.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Predicted transcriptional regulators
L3_079_000M1_scaffold_2056_6
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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4517..5122
DNA (606bp) protein (202aa)
Acetyltransferase (GNAT) family n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BX25_9FIRM
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:CDD70032.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Acetyltransferase (GNAT) family.
L3_079_000M1_scaffold_2056_7
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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comp(5094..5714)
DNA (621bp) protein (207aa)
Putative flavin-nucleotide-binding protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BY98_9FIRM
Putative flavin-nucleotide-binding protein {ECO:0000313|EMBL:CDD70033.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
pyridoxamine 5'-phosphate oxidase
L3_079_000M1_scaffold_2056_8
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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comp(5686..6861)
DNA (1176bp) protein (392aa)
Cation efflux family protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BW69_9FIRM
Cation efflux family protein {ECO:0000313|EMBL:CDD70035.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
cation diffusion facilitator family transporter
L3_079_000M1_scaffold_2056_9
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6944..8185)
DNA (1242bp) protein (414aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BW16_9FIRM
L3_079_000M1_scaffold_2056_10
unknown

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comp(8190..8681)
DNA (492bp) protein (164aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032, ECO:0000313|EMBL:CBL38605.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
3-isopropylmalate dehydratase small subunit n=5 Tax=Clostridiales RepID=D4N160_9FIRM
L3_079_000M1_scaffold_2056_11
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8702..9946)
DNA (1245bp) protein (415aa)
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
3-isopropylmalate dehydratase large subunit n=2 Tax=Clostridiales RepID=D4N159_9FIRM
L3_079_000M1_scaffold_2056_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9957..10535)
DNA (579bp) protein (193aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1H0_9FIRM
L3_079_000M1_scaffold_2056_13
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(10622..11062)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1X7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD71980.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2056_14
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(11059..11328)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD71981.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Coenzyme PQQ synthesis protein D (PqqD).
L3_079_000M1_scaffold_2056_15
unknown

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11495..11857
DNA (363bp) protein (121aa)

This feature has no annotations

L3_079_000M1_scaffold_2056_16
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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comp(11746..12498)
DNA (753bp) protein (251aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C3R1_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDD71983.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2056_17
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(12577..13350)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD71985.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Predicted permeases
L3_079_000M1_scaffold_2056_18
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(13352..13786)
DNA (435bp) protein (145aa)
Transcriptional regulator MarR family n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C2J8_9FIRM
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDD71987.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
transcriptional regulator, MarR family
L3_079_000M1_scaffold_2056_19
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

14114..14614
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1I0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD71989.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2056_20
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

14614..14877
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1N2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD71991.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2056_21
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

14879..15529
DNA (651bp) protein (217aa)
Manganese containing catalase n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C2K4_9FIRM
Manganese containing catalase {ECO:0000313|EMBL:CDD71992.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Mn-containing catalase
L3_079_000M1_scaffold_2056_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15809..16039
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI00017F5E61
putative conjugative transposon proteinTn1549-like, CTn4-Orf1
Putative conjugative transposon protein Tn1549-like, CTn4-Orf1 {ECO:0000313|EMBL:CAJ67968.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Displaying 22 items

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