ggKbase home page

L3_079_000M1_scaffold_2187

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_2187_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(113..1009)
DNA (897bp) protein (299aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJL9_9FIRM
ROK family protein {ECO:0000313|EMBL:EFV16948.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_079_000M1_scaffold_2187_2
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1010..3721)
DNA (2712bp) protein (904aa)
Glycosyl hydrolase family 38 domain-containing protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJM0_9FIRM
Glycosyl hydrolase family 38 domain-containing protein {ECO:0000313|EMBL:EFV16949.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
alpha-mannosidase
L3_079_000M1_scaffold_2187_3
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3817..4926)
DNA (1110bp) protein (370aa)
PTS system protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJM1_9FIRM
PTS system protein {ECO:0000313|EMBL:EFV16950.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
PTS system, Fru family, IIC component
L3_079_000M1_scaffold_2187_4
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4979..5290)
DNA (312bp) protein (104aa)
PTS system protein n=2 Tax=Lachnospiraceae RepID=E5VJM2_9FIRM
PTS system protein {ECO:0000313|EMBL:CDA33242.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Fru family PTS system transporter subunit IIB
L3_079_000M1_scaffold_2187_5
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5292..5744)
DNA (453bp) protein (151aa)
PTS system protein n=2 Tax=Lachnospiraceae RepID=E5VJM3_9FIRM
PTS system protein {ECO:0000313|EMBL:CDA33241.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
PTS system, mannose-specfic IIA component
L3_079_000M1_scaffold_2187_6
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6043..7977
DNA (1935bp) protein (645aa)
PRD domain-containing protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJM4_9FIRM
PRD domain-containing protein {ECO:0000313|EMBL:EFV16953.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
transcription antiterminator
L3_079_000M1_scaffold_2187_7
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8042..10117)
DNA (2076bp) protein (692aa)
Uncharacterized protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q2F5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKY21865.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
plasmid pRiA4b ORF-3 family protein
L3_079_000M1_scaffold_2187_8
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(10322..11527)
DNA (1206bp) protein (402aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
RNA-splicing ligase RtcB n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C394_9FIRM
hypothetical protein
L3_079_000M1_scaffold_2187_9
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(11558..12505)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C2W3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD72426.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2187_10
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(12502..13746)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C3T5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD72427.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2187_11
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13955..14236)
DNA (282bp) protein (94aa)
IS605 OrfB family transposase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VPH2_9FIRM
IS605 OrfB family transposase {ECO:0000313|EMBL:EFV15224.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
transposase
L3_079_000M1_scaffold_2187_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14648..14950)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P400_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS20629.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
hypothetical protein
L3_079_000M1_scaffold_2187_13
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(15308..15712)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BYY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD70960.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
L3_079_000M1_scaffold_2187_14
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

16152..16583
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BYJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD70959.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2187_15
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

16638..17744
DNA (1107bp) protein (369aa)
Radical SAM domain protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C0U4_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDD70958.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Predicted Fe-S oxidoreductases
L3_079_000M1_scaffold_2187_16
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17810..17965)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P400_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS20629.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
hypothetical protein
L3_079_000M1_scaffold_2187_17
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18193..18759)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16962.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_079_000M1_scaffold_2187_18
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18770..19006)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16963.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
hypothetical protein
L3_079_000M1_scaffold_2187_19
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(19063..19197)
DNA (135bp) protein (45aa)
N-acyl-D-amino-acid deacylase n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BYX6_9FIRM
N-acyl-D-amino-acid deacylase {ECO:0000313|EMBL:CDD70955.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
TIM-barrel fold metal-dependent hydrolase
L3_079_000M1_scaffold_2187_20
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19444..19596
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AD44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ27362.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
LuxR family transcriptional regulator
L3_079_000M1_scaffold_2187_21
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(19657..19893)
DNA (237bp) protein (79aa)
Sporulation transcriptional regulator SpoIIID n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C0T9_9FIRM
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:CDD70953.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
sporulation transcriptional regulator SpoIIID
L3_079_000M1_scaffold_2187_22
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(20386..21339)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BYH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD70949.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Putative GTPases (G3E family)
L3_079_000M1_scaffold_2187_23
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(21358..22464)
DNA (1107bp) protein (369aa)
Putative GTPases (G3E family) n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C0S6_9FIRM
Putative GTPases (G3E family) {ECO:0000313|EMBL:CDD70938.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Putative GTPases (G3E family)
L3_079_000M1_scaffold_2187_24
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

22711..22827
DNA (117bp) protein (39aa)
Glycerol dehydrogenase and related enzymes (EC:1.1.1.6)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BYM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD70936.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
L3_079_000M1_scaffold_2187_25
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(22893..23348)
DNA (456bp) protein (152aa)
Uncharacterized protein possibly involved in aromatic compounds catabolism n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BYG2_9FIRM
Uncharacterized protein possibly involved in aromatic compounds catabolism {ECO:0000313|EMBL:CDD70934.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Uncharacterized protein, possibly involved in aromatic compounds catabolism
L3_079_000M1_scaffold_2187_26
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

23496..23921
DNA (426bp) protein (142aa)
ATP-dependent RNA helicase DDX50 n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C0S2_9FIRM
ATP-dependent RNA helicase DDX50 {ECO:0000313|EMBL:CDD70933.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_079_000M1_scaffold_2187_27
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

24128..24328
DNA (201bp) protein (67aa)
Cold-shock' DNA-binding domain-containing protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BZJ1_9FIRM
Cold-shock' DNA-binding domain-containing protein {ECO:0000313|EMBL:CDD70932.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
cold-shock DNA-binding protein family
L3_079_000M1_scaffold_2187_28
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24677..26044)
DNA (1368bp) protein (456aa)
Citrate synthase (EC:2.3.3.1 2.3.3.5)
Citrate synthase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VKR3_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_079_000M1_scaffold_2187_29
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26079..26840)
DNA (762bp) protein (254aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
ABC transporter n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5YWU3_9FIRM
ABC transporter {ECO:0000313|EMBL:CDA31320.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_079_000M1_scaffold_2187_30
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(26852..27508)
DNA (657bp) protein (219aa)
Amino acid ABC transporter membrane protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BXL1_9FIRM
Amino acid ABC transporter membrane protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CDD70634.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
Displaying items 1-30 of 38 in total

View Taxonomy