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L3_079_000M1_scaffold_3354

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_3354_1
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(786..1016)
DNA (231bp) protein (77aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ERF9_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:CCX93934.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L3_079_000M1_scaffold_3354_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(982..1230)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45717.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_079_000M1_scaffold_3354_3
unknown

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comp(1227..1385)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_079_000M1_scaffold_3354_4
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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1629..2135
DNA (507bp) protein (169aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
tRNA-adenosine deaminase (EC:3.5.4.-)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H6V5_9FIRM
L3_079_000M1_scaffold_3354_5
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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2132..2542
DNA (411bp) protein (137aa)
Predicted integral membrane protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AW51_9FIRM
Predicted integral membrane protein {ECO:0000313|EMBL:CCX46194.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Predicted integral membrane protein
L3_079_000M1_scaffold_3354_6
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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2632..4605
DNA (1974bp) protein (658aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EQ30_9FIRM
L3_079_000M1_scaffold_3354_7
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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5453..7096
DNA (1644bp) protein (548aa)
Glutamate--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAB1_9FIRM
Glutamate--tRNA ligase {ECO:0000313|EMBL:CDB30874.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
L3_079_000M1_scaffold_3354_8
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7099..7737
DNA (639bp) protein (213aa)
Chloramphenicol O-acetyltransferase n=2 Tax=Oscillibacter RepID=U2R4L4_9FIRM
Chloramphenicol O-acetyltransferase {ECO:0000313|EMBL:ERK65594.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative acetyltransferase
L3_079_000M1_scaffold_3354_9
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7734..8294
DNA (561bp) protein (187aa)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED n=1 Tax=Clostridium sp. CAG:43 RepID=R7B3Y1_9CLOT
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED {ECO:0000313|EMBL:CDD58926.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_079_000M1_scaffold_3354_10
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8855..9811)
DNA (957bp) protein (319aa)
Transcriptional regulator with HTH domain and aminotransferase domain n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GNU6_9FIRM
Transcriptional regulator with HTH domain and aminotransferase domain {ECO:0000313|EMBL:CDB27118.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative GntR family transcriptional regulator
Displaying 10 items

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