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L3_079_000M1_scaffold_2209

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_2209_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(628..1983)
DNA (1356bp) protein (452aa)
putative RNA methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6ML82_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDB86582.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_079_000M1_scaffold_2209_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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2119..3009
DNA (891bp) protein (297aa)
Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins (EC:1.97.1.4)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IXD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY41437.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_079_000M1_scaffold_2209_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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3404..3982
DNA (579bp) protein (193aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
lexA; LexA repressor (EC:3.4.21.88)
LexA repressor n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IMA2_9FIRM
L3_079_000M1_scaffold_2209_4
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(4564..5628)
DNA (1065bp) protein (355aa)
Sporulation integral membrane protein YtvI n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJU4_9FIRM
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CDB87733.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
sporulation integral membrane protein YtvI
L3_079_000M1_scaffold_2209_5
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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5748..6188
DNA (441bp) protein (147aa)
UPF0735 ACT domain-containing protein BN490_00183 n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAL3_9FIRM
UPF0735 ACT domain-containing protein BN490_00183 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_079_000M1_scaffold_2209_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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6307..6534
DNA (228bp) protein (76aa)
Acyl carrier protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWZ3_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
acyl carrier protein
L3_079_000M1_scaffold_2209_7
unknown

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comp(7372..7848)
DNA (477bp) protein (159aa)

This feature has no annotations

L3_079_000M1_scaffold_2209_8
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(7868..8323)
DNA (456bp) protein (152aa)
Large-conductance mechanosensitive channel n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EZ97_9FIRM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
mscL; large-conductance mechanosensitive channel
L3_079_000M1_scaffold_2209_9
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(8341..9636)
DNA (1296bp) protein (432aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HGS4_9FIRM
L3_079_000M1_scaffold_2209_10
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(9658..10227)
DNA (570bp) protein (190aa)
SH3 type 3 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IXC7_9FIRM
SH3 type 3 {ECO:0000313|EMBL:CCY41427.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_079_000M1_scaffold_2209_11
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(10215..11108)
DNA (894bp) protein (298aa)
Putative stage 0 sporulation protein J n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H027_9FIRM
Putative stage 0 sporulation protein J {ECO:0000313|EMBL:CDB31058.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
parB; chromosome partitioning protein ParB
L3_079_000M1_scaffold_2209_12
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(11105..11869)
DNA (765bp) protein (255aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LL52_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:CDB86585.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
parA; chromosome partitioning protein ParA
L3_079_000M1_scaffold_2209_13
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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12369..13145
DNA (777bp) protein (259aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DDB2_9FIRM
L3_079_000M1_scaffold_2209_14
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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13145..14398
DNA (1254bp) protein (418aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D3M8_9FIRM
L3_079_000M1_scaffold_2209_15
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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14403..15203
DNA (801bp) protein (267aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IXR4_9FIRM
L3_079_000M1_scaffold_2209_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15208..15984
DNA (777bp) protein (259aa)
Predicted permeases n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVQ3_9FIRM
Predicted permeases
Predicted permeases {ECO:0000313|EMBL:CBK97172.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_079_000M1_scaffold_2209_17
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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16318..17118
DNA (801bp) protein (267aa)
Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (EC:3.1.3.25)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HN24_9FIRM
Archaeal fructose-1 6-bisphosphatase and related enzymes of inositol monophosphatase family {ECO:0000313|EMBL:CDB26003.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_079_000M1_scaffold_2209_18
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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17115..18860
DNA (1746bp) protein (582aa)
M3 family oligoendopeptidase id=4432822 bin=GWF2_Clostridiales_38_85 species=[Clostridium] difficile genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
putative exported metalloendopeptidase
Tax=GWF2_Clostridiales_38_85_curated
Displaying 18 items

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