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L3_079_000M1_scaffold_1429

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1429_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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432..2033
DNA (1602bp) protein (534aa)
Peptide chain release factor 3 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M1Y3_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
prfC; peptide chain release factor 3
L3_079_000M1_scaffold_1429_2
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(2699..3592)
DNA (894bp) protein (298aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ribC; flavokinase/FAD synthetase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H3H7_9FIRM
L3_079_000M1_scaffold_1429_3
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(3603..4469)
DNA (867bp) protein (289aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
truB; tRNA pseudouridine synthase (EC:5.4.99.-)
tRNA pseudouridine synthase B n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYK9_9FIRM
L3_079_000M1_scaffold_1429_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(4469..5419)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IUQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40522.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
putative hydrolase
L3_079_000M1_scaffold_1429_5
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(5397..5774)
DNA (378bp) protein (126aa)
Ribosome-binding factor A n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HZU2_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
rbfA; ribosome-binding factor A
L3_079_000M1_scaffold_1429_6
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(6010..8346)
DNA (2337bp) protein (779aa)
Translation initiation factor IF-2 n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HCR8_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
infB; translation initiation factor IF-2
L3_079_000M1_scaffold_1429_7
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(8374..8793)
DNA (420bp) protein (140aa)
Ribosomal protein L7Ae n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EPT9_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:CCX90647.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L3_079_000M1_scaffold_1429_8
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8780..9058)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00324.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_079_000M1_scaffold_1429_9
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(9144..10217)
DNA (1074bp) protein (358aa)
Transcription termination factor NusA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MRU2_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
nusA; transcription elongation protein NusA
L3_079_000M1_scaffold_1429_10
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(10236..10688)
DNA (453bp) protein (151aa)
Ribosome maturation factor RimP n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ILS0_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_079_000M1_scaffold_1429_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(11711..12154)
DNA (444bp) protein (148aa)
rpiB1; ribose 5-phosphate isomerase RpiB1 (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IG67_9FIRM
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:CCY41103.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_079_000M1_scaffold_1429_12
unknown

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comp(12171..13232)
DNA (1062bp) protein (354aa)

This feature has no annotations

L3_079_000M1_scaffold_1429_13
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13930..15030
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DN79_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI98245.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_079_000M1_scaffold_1429_14
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(15182..17008)
DNA (1827bp) protein (609aa)
ABC transporter related n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GXW4_9FIRM
ABC transporter related {ECO:0000313|EMBL:CDB30308.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ABC transporter
L3_079_000M1_scaffold_1429_15
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(17008..18831)
DNA (1824bp) protein (608aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H8R5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30309.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ABC transporter
L3_079_000M1_scaffold_1429_16
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19489..20031
DNA (543bp) protein (181aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Phosphodiesterase family protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FCC5_9FIRM
hypothetical protein
L3_079_000M1_scaffold_1429_17
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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20043..20954
DNA (912bp) protein (304aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AVE6_9FIRM
Displaying 17 items

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