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L3_079_000M1_scaffold_1787

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1787_1
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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174..947
DNA (774bp) protein (258aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GVA6_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
putative RNA polymerase sigma factor
L3_079_000M1_scaffold_1787_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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1007..1285
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IYG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY41772.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_079_000M1_scaffold_1787_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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1485..2213
DNA (729bp) protein (243aa)
30S ribosomal protein S2 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IN89_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
rpsB; 30S ribosomal protein S2
L3_079_000M1_scaffold_1787_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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2297..3217
DNA (921bp) protein (307aa)
Elongation factor Ts n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IYG2_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
tsf; elongation factor Ts
L3_079_000M1_scaffold_1787_5
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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4178..5254
DNA (1077bp) protein (359aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LHL9_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hrcA; heat-inducible transcription repressor HrcA
L3_079_000M1_scaffold_1787_6
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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5258..5821
DNA (564bp) protein (188aa)
Protein GrpE n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LTJ6_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
grpE; GrpE protein
L3_079_000M1_scaffold_1787_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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5856..7685
DNA (1830bp) protein (610aa)
Chaperone protein DnaK n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LM84_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
dnaK; chaperone protein DnaK
L3_079_000M1_scaffold_1787_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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7772..8923
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LXV8_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
dnaJ; chaperone protein DnaJ
L3_079_000M1_scaffold_1787_9
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9098..9766
DNA (669bp) protein (223aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERK6_9FIRM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EEG38103.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
nicotinamide mononucleotide transporter PnuC
L3_079_000M1_scaffold_1787_10
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10038..11660
DNA (1623bp) protein (541aa)
xenobiotic-transporting ATPase (EC:3.6.3.44)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30275.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_079_000M1_scaffold_1787_11
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11711..12994)
DNA (1284bp) protein (428aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LW16_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:EOS63000.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_079_000M1_scaffold_1787_12
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13750..15081
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9D4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67443.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_079_000M1_scaffold_1787_13
unknown

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15114..15701
DNA (588bp) protein (196aa)

This feature has no annotations

L3_079_000M1_scaffold_1787_14
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16057..16824)
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBL9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EET61822.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
putative amino acid ABC transporter, ATP-binding protein
L3_079_000M1_scaffold_1787_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16839..17507)
DNA (669bp) protein (223aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LYT3_9FIRM
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:EOS63501.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_079_000M1_scaffold_1787_16
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17873..18691)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LXG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63500.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_079_000M1_scaffold_1787_17
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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19405..20226
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H172_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27241.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rRNA methylases
L3_079_000M1_scaffold_1787_18
Firmicutes bacterium CAG:449, Firmicutes, Bacteria

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20251..20604
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:449 RepID=R6QX53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC41213.1}; TaxID=1263023 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:449.;"
hypothetical protein
L3_079_000M1_scaffold_1787_19
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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20607..21476
DNA (870bp) protein (290aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
putative pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HBM7_9FIRM
L3_079_000M1_scaffold_1787_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21471..22517)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46557.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Transposase and inactivated derivatives, IS30 family
L3_079_000M1_scaffold_1787_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22576..22839)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46558.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
transcriptional regulator
Displaying 21 items

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