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L3_079_000M1_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_235_1
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(497..787)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Clostridium sp. CAG:413 RepID=R6PT99_9CLOT
CRISPR-associated Cas2 family protein
L3_079_000M1_scaffold_235_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(792..1823)
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NLD9_9CLOT
CRISPR-associated protein Cas1
L3_079_000M1_scaffold_235_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1820..2482)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GZQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26701.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
CRISPR-associated protein Cas4
L3_079_000M1_scaffold_235_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2472..3317)
DNA (846bp) protein (282aa)
CRISPR-associated protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B53031
Uncharacterized protein {ECO:0000313|EMBL:EEG30524.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG
L3_079_000M1_scaffold_235_5
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3321..5108)
DNA (1788bp) protein (596aa)
hypothetical protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B547CB
CRISPR-associated protein cas8c/csd1, subtype I-c/dvulg {ECO:0000313|EMBL:EOS63280.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
CRISPR-associated protein, Csd1 family
L3_079_000M1_scaffold_235_6
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5108..5842)
DNA (735bp) protein (245aa)
CRISPR-associated protein Cas5 n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B34B42
CRISPR-associated protein cas5, subtype I-c/dvulg {ECO:0000313|EMBL:EOS63279.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
CRISPR-associated protein, Csd5d family
L3_079_000M1_scaffold_235_7
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(5848..8211)
DNA (2364bp) protein (788aa)
hypothetical protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B5FBE0
Uncharacterized protein {ECO:0000313|EMBL:CCX73937.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
CRISPR-associated helicase Cas3
L3_079_000M1_scaffold_235_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

8688..9089
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MNS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87447.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
GNAT family acetyltransferase
L3_079_000M1_scaffold_235_9
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9377..16798)
DNA (7422bp) protein (2474aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FQL8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS74137.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
FMN-binding domain-containing protein
L3_079_000M1_scaffold_235_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16932..19829)
DNA (2898bp) protein (966aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO24383.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
subtilisin-like serine protease
L3_079_000M1_scaffold_235_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(20113..21288)
DNA (1176bp) protein (392aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
alr; Alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE36_9FIRM
L3_079_000M1_scaffold_235_12
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(21304..21867)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30513.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_079_000M1_scaffold_235_13
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(21880..22716)
DNA (837bp) protein (279aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H9G5_9FIRM
carbohydrate kinase
L3_079_000M1_scaffold_235_14
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists


23163..24206
DNA (1044bp) protein (348aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
pheS; phenylalanyl-tRNA synthetase alpha chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ER09_9FIRM
L3_079_000M1_scaffold_235_15
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists


24219..26606
DNA (2388bp) protein (796aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
pheT; Phenylalanine-tRNA ligase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HZH1_9FIRM
L3_079_000M1_scaffold_235_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

26703..26948
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87225.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_235_17
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

27166..27456
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EIC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX91019.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_079_000M1_scaffold_235_18
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

27487..28449
DNA (963bp) protein (321aa)
NlpC/P60 family protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EF72_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:CCX91018.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
NLP/P60 protein
L3_079_000M1_scaffold_235_19
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28562..29707
DNA (1146bp) protein (382aa)
Predicted oxidoreductases of the aldo/keto reductase family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HSR2_9FIRM
Predicted oxidoreductases of the aldo/keto reductase family {ECO:0000313|EMBL:CCY32813.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted oxidoreductases of the aldo/keto reductase family
L3_079_000M1_scaffold_235_20
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(29774..30376)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GXL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30203.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
Hypothetical protein
L3_079_000M1_scaffold_235_21
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

30875..31126
DNA (252bp) protein (84aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MQL3_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDB88112.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative transcriptional regulator
L3_079_000M1_scaffold_235_22
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31203..31415)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P638_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS13195.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_079_000M1_scaffold_235_23
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

31590..31706
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LQE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88110.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_079_000M1_scaffold_235_24
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

31830..32426
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LWQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88109.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_235_25
unknown

Not on your lists

32472..32669
DNA (198bp) protein (66aa)

This feature has no annotations

L3_079_000M1_scaffold_235_26
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

32715..32945
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M115_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88106.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_235_27
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32957..33187
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GPL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27378.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_079_000M1_scaffold_235_28
unknown

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33236..33499
DNA (264bp) protein (88aa)

This feature has no annotations

L3_079_000M1_scaffold_235_29
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

33516..33974
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LWP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88104.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_079_000M1_scaffold_235_30
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

33977..34285
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LKY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88103.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Displaying items 1-30 of 71 in total

View Taxonomy