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L3_079_000M1_scaffold_696

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_696_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(145..684)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C9K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF53810.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
transposase
L3_079_000M1_scaffold_696_2
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(681..1250)
DNA (570bp) protein (190aa)
Regulatory protein TetR n=1 Tax=Clostridium sp. CAG:510 RepID=R6C371_9CLOT
Regulatory protein TetR {ECO:0000313|EMBL:CDA67634.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
regulatory protein TetR
L3_079_000M1_scaffold_696_3
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(1676..2878)
DNA (1203bp) protein (401aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H7P3_9FIRM
L3_079_000M1_scaffold_696_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(2942..4141)
DNA (1200bp) protein (400aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE72_9FIRM
L3_079_000M1_scaffold_696_5
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

4273..5406
DNA (1134bp) protein (378aa)
UPF0348 protein BN515_01509 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYU5_9FIRM
UPF0348 protein BN515_01509 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_696_6
unknown

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5474..5881
DNA (408bp) protein (136aa)

This feature has no annotations

L3_079_000M1_scaffold_696_7
unknown

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comp(5794..5973)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_079_000M1_scaffold_696_8
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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6010..6210
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=2 Tax=environmental samples RepID=R5IHC9_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
LSU ribosomal protein L31P
L3_079_000M1_scaffold_696_9
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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6344..7615
DNA (1272bp) protein (424aa)
GTPase HflX n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EJF9_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hlfX; putative GTP-binding protein HflX
L3_079_000M1_scaffold_696_10
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

7612..8238
DNA (627bp) protein (209aa)
IMPACT family member yvyE n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYH3_9FIRM
IMPACT family member yvyE {ECO:0000313|EMBL:CDB29515.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_079_000M1_scaffold_696_11
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

8275..9291
DNA (1017bp) protein (339aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HUI3_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
deoxyguanosinetriphosphate triphosphohydrolase-like protein
L3_079_000M1_scaffold_696_12
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

9306..11057
DNA (1752bp) protein (584aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYV0_9FIRM
L3_079_000M1_scaffold_696_13
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

11061..12179
DNA (1119bp) protein (373aa)
RNA polymerase sigma factor SigA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MNG5_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
RNA polymerase, sigma 38 subunit, RpoS
L3_079_000M1_scaffold_696_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

12292..12522
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IS75_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Acyl carrier protein
L3_079_000M1_scaffold_696_15
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

12939..14534
DNA (1596bp) protein (532aa)
dnaX; DNA polymerase III gamma/tau subunit (EC:2.7.7.7)
DNA polymerase III subunit gamma and tau n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HUI9_9FIRM
DNA polymerase III subunit gamma and tau {ECO:0000313|EMBL:CDB29522.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_079_000M1_scaffold_696_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

14734..15078
DNA (345bp) protein (115aa)
Nucleoid-associated protein BN515_01758 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MP56_9FIRM
Nucleoid-associated protein BN515_01758 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_696_17
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

15078..15677
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJH1_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
recR; recombination protein RecR
L3_079_000M1_scaffold_696_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15735..16610)
DNA (876bp) protein (292aa)
EDD domain protein, DegV family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRD3_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EDN01629.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_079_000M1_scaffold_696_19
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(16616..17248)
DNA (633bp) protein (211aa)
Transcriptional regulator TetR family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AUR8_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCX45709.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
regulatory protein TetR
L3_079_000M1_scaffold_696_20
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(17366..18094)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5INY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY43800.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_079_000M1_scaffold_696_21
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(18091..19800)
DNA (1710bp) protein (570aa)
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II (EC:6.2.1.3)
AMP-binding enzyme n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HWB4_9FIRM
AMP-binding enzyme {ECO:0000313|EMBL:CDB30057.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_079_000M1_scaffold_696_22
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

20267..22627
DNA (2361bp) protein (787aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent helicase PcrA n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1P1_9FIRM
L3_079_000M1_scaffold_696_23
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

22679..23323
DNA (645bp) protein (215aa)
Sporulation protein YunB n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MR77_9FIRM
Sporulation protein YunB {ECO:0000313|EMBL:CDB88342.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_696_24
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

23320..25296
DNA (1977bp) protein (659aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HXU9_9FIRM
L3_079_000M1_scaffold_696_25
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

25775..26140
DNA (366bp) protein (122aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
mRNA interferase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAG8_9FIRM
Growth inhibitor
L3_079_000M1_scaffold_696_26
unknown

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26182..26811
DNA (630bp) protein (210aa)

This feature has no annotations

L3_079_000M1_scaffold_696_27
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

26750..28396
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D423_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX71632.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
polysaccharide deacetylase
L3_079_000M1_scaffold_696_28
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(28449..29825)
DNA (1377bp) protein (459aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
class II fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IT66_9FIRM
L3_079_000M1_scaffold_696_29
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29979..38333)
DNA (8355bp) protein (2785aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5Z3I9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA28571.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
hypothetical protein
Displaying 29 items

View Taxonomy