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L3_079_000M1_scaffold_927

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_927_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(104..1093)
DNA (990bp) protein (330aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Ornithine carbamoyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0B4_9FIRM
L3_079_000M1_scaffold_927_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(1105..2268)
DNA (1164bp) protein (388aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Acetylornithine aminotransferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE13_9FIRM
acetylornithine and succinylornithine aminotransferase
L3_079_000M1_scaffold_927_3
unknown

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comp(2769..3167)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0B042_SYNWW
hypothetical protein
L3_079_000M1_scaffold_927_4
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(3164..3841)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30661.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_079_000M1_scaffold_927_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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4135..6240
DNA (2106bp) protein (702aa)
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ8_9FIRM
Glutamine synthetase {ECO:0000313|EMBL:EGJ46954.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_079_000M1_scaffold_927_6
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(6295..6723)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H7S2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29949.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
FOG: CBS domain
L3_079_000M1_scaffold_927_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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6915..7391
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87738.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_927_8
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(7471..7662)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EBS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX89888.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L3_079_000M1_scaffold_927_9
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(7677..7994)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J174_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42687.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_079_000M1_scaffold_927_10
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8065..8868)
DNA (804bp) protein (268aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M6W5_9FIRM
L3_079_000M1_scaffold_927_11
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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9130..10296
DNA (1167bp) protein (389aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
homoserine dehydrogenase (EC:1.-.-.- 1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D757_9FIRM
L3_079_000M1_scaffold_927_12
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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10312..11625
DNA (1314bp) protein (438aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Aspartokinase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B2B2_9FIRM
Aspartokinase
L3_079_000M1_scaffold_927_13
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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11646..12650
DNA (1005bp) protein (335aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EFE7_9FIRM
L3_079_000M1_scaffold_927_14
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(12699..13475)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M1K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88311.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_927_15
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(13746..14024)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D859_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA80973.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_079_000M1_scaffold_927_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(14265..15302)
DNA (1038bp) protein (346aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LV78_9FIRM
L3_079_000M1_scaffold_927_17
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(15307..15912)
DNA (606bp) protein (202aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
ruvA; Holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LNY6_9FIRM
L3_079_000M1_scaffold_927_18
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(15912..16415)
DNA (504bp) protein (168aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LZJ5_9FIRM
L3_079_000M1_scaffold_927_19
unknown

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comp(16396..16596)
DNA (201bp) protein (67aa)

This feature has no annotations

L3_079_000M1_scaffold_927_20
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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16756..18159
DNA (1404bp) protein (468aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IP10_9FIRM
miaB; isopentenyl-adenosine A37 tRNA methylthiolase
L3_079_000M1_scaffold_927_21
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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18185..20776
DNA (2592bp) protein (864aa)
DNA mismatch repair protein MutS n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EHW4_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
mutS; DNA mismatch repair protein MutS
L3_079_000M1_scaffold_927_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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20797..21534
DNA (738bp) protein (246aa)
CAAX amino terminal protease family protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M0D2_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:CDB87881.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_079_000M1_scaffold_927_23
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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21542..23503
DNA (1962bp) protein (654aa)
DNA mismatch repair protein MutL n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J4R2_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
mutL; DNA mismatch repair protein MutL
L3_079_000M1_scaffold_927_24
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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23506..24450
DNA (945bp) protein (315aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
miaA; tRNA dimethylallyltransferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LK83_9FIRM
L3_079_000M1_scaffold_927_25
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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24510..24725
DNA (216bp) protein (72aa)
RNA-binding protein Hfq n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HA69_9FIRM
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
RNA chaperone Hfq
L3_079_000M1_scaffold_927_26
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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24782..26002
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IP26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY43928.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_079_000M1_scaffold_927_27
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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25999..26712
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ELK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX92284.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_079_000M1_scaffold_927_28
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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26747..27232
DNA (486bp) protein (162aa)
Cell division protein SepF n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HB95_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
sepF; cell division protein SepF
L3_079_000M1_scaffold_927_29
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

27277..28083
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LK88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87888.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative cell division protein
L3_079_000M1_scaffold_927_30
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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28494..31292
DNA (2799bp) protein (933aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HA91_9FIRM
Displaying 30 items

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