ggKbase home page

L3_079_000M1_scaffold_1871

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1871_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1609)
DNA (1608bp) protein (536aa)
Putative efflux protein, MATE family n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E2G5_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBK89605.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_079_000M1_scaffold_1871_2
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1745..2677)
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Cysteine synthase K/M/A n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB46_EUBR3
cysteine synthase K/M/A
L3_079_000M1_scaffold_1871_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2830..4248)
DNA (1419bp) protein (473aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6DZU9_9FIRM
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CBK92112.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_079_000M1_scaffold_1871_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4688..5776)
DNA (1089bp) protein (363aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Eubacterium RepID=C4ZB38_EUBR3
mnmA; tRNA-specific 2-thiouridylase MnmA
L3_079_000M1_scaffold_1871_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5776..6222)
DNA (447bp) protein (149aa)
NifU protein n=3 Tax=Eubacterium RepID=C4ZB37_EUBR3
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU, Clostridium type {ECO:0000313|EMBL:CBK92595.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_1871_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6298..7491)
DNA (1194bp) protein (398aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000313|EMBL:CBK92106.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Cysteine desulfurase NifS n=2 Tax=Eubacterium rectale RepID=D4JGW0_9FIRM
L3_079_000M1_scaffold_1871_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7511..7945)
DNA (435bp) protein (145aa)
Transcriptional regulator, BadM/Rrf2 family n=3 Tax=Eubacterium rectale RepID=D4JGV9_9FIRM
transcriptional regulator, BadM/Rrf2 family
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:CBK92105.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_079_000M1_scaffold_1871_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7988..8872)
DNA (885bp) protein (295aa)
NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding (EC:3.6.1.22)
NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding {ECO:0000313|EMBL:CBK92592.1}; EC=3.6.1.22 {ECO:0000313|EMBL:CBK92592.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding n=1 Tax=Eubacterium rectale M104/1 RepID=D4JGV8_9FIRM
L3_079_000M1_scaffold_1871_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9423..9896)
DNA (474bp) protein (158aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Cytidine and deoxycytidylate deaminase family protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB31_EUBR3
cytidine and deoxycytidylate deaminase family protein
L3_079_000M1_scaffold_1871_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9961..10506
DNA (546bp) protein (182aa)
Acetyltransferases, including N-acetylases of ribosomal proteins (EC:2.3.1.128)
Acetyltransferases, including N-acetylases of ribosomal proteins {ECO:0000313|EMBL:CBK92590.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CBK92590.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Acetyltransferases, including N-acetylases of ribosomal proteins n=1 Tax=Eubacterium rectale M104/1 RepID=D4JGV6_9FIRM
L3_079_000M1_scaffold_1871_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10513..11334)
DNA (822bp) protein (274aa)
purine nucleoside phosphorylase I, inosine and guanosine-specific (EC:2.4.2.1)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Purine nucleoside phosphorylase n=2 Tax=Eubacterium rectale RepID=C4ZB26_EUBR3
L3_079_000M1_scaffold_1871_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11390..12577)
DNA (1188bp) protein (396aa)
Phosphopentomutase {ECO:0000255|HAMAP-Rule:MF_00740}; EC=5.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00740};; Phosphodeoxyribomutase {ECO:0000255|HAMAP-Rule:MF_00740}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Phosphopentomutase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=DEOB_EUBR3
phosphopentomutase
L3_079_000M1_scaffold_1871_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12653..13690)
DNA (1038bp) protein (346aa)
Adenosine deaminase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB24_EUBR3
adenosine deaminase
Adenosine deaminase {ECO:0000313|EMBL:ACR74099.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_1871_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13759..14178)
DNA (420bp) protein (140aa)
Cytidine deaminase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB23_EUBR3
cytidine deaminase
Cytidine deaminase {ECO:0000313|EMBL:ACR74098.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_1871_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14214..14924)
DNA (711bp) protein (237aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Deoxyribose-phosphate aldolase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB22_EUBR3
deoxyribose-phosphate aldolase
L3_079_000M1_scaffold_1871_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14902..15684)
DNA (783bp) protein (261aa)
Uridine phosphorylase {ECO:0000256|RuleBase:RU361131}; EC=2.4.2.3 {ECO:0000256|RuleBase:RU361131};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Uridine phosphorylase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB21_EUBR3
uridine phosphorylase
L3_079_000M1_scaffold_1871_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15785..16546)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZB20_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR74095.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_1871_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16757..17143
DNA (387bp) protein (129aa)
Ferric uptake regulator, Fur family n=4 Tax=Eubacterium RepID=C4ZB19_EUBR3
ferric uptake regulator, Fur family
Fe2+/Zn2+ uptake regulation proteins {ECO:0000313|EMBL:CBK92580.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_1871_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17207..17794
DNA (588bp) protein (196aa)
Rubrerythrin n=4 Tax=Eubacterium RepID=D4JGU5_9FIRM
Rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:CBK92579.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_1871_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17907..18296)
DNA (390bp) protein (130aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Eubacterium rectale M104/1 RepID=D4JGU4_9FIRM
ABC-type transport system, involved in lipoprotein release, permease component
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CBK92578.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Displaying 20 items

View Taxonomy