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L3_079_000M1_scaffold_86

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_86_1
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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143..520
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J340_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS28503.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
hypothetical protein
L3_079_000M1_scaffold_86_2
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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694..2040
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:356 RepID=R7A132_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD36462.1}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
transporter
L3_079_000M1_scaffold_86_3

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2043..2654
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SRK6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC49876.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_079_000M1_scaffold_86_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2659..3114
DNA (456bp) protein (152aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TJC6_CLOBB
hypothetical protein
Putative Duf1863 (Tir-like) family protein {ECO:0000313|EMBL:CDH90261.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_079_000M1_scaffold_86_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3131..3745
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TJC7_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD22507.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_079_000M1_scaffold_86_6
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3735..4406
DNA (672bp) protein (224aa)
Conserved hypothetical membrane protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MF82_9CLOT
Conserved hypothetical membrane protein {ECO:0000313|EMBL:CCY83886.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_000M1_scaffold_86_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4674..6374
DNA (1701bp) protein (567aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JGF6_9FIRM
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
Uncharacterized protein {ECO:0000313|EMBL:CBK94555.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_86_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6431..7789
DNA (1359bp) protein (453aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Eubacterium rectale M104/1 RepID=D4JGF8_9FIRM
sugar (Glycoside-Pentoside-Hexuronide) transporter
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:CBK94557.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_86_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7862..12112)
DNA (4251bp) protein (1417aa)
Putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9C2_EUBR3
putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase
Putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase {ECO:0000313|EMBL:ACR75344.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_86_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12417..13259
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=2 Tax=Eubacterium rectale RepID=C4Z9C4_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75346.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_86_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13346..15031
DNA (1686bp) protein (562aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088, ECO:0000313|EMBL:CBK94551.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Glutaminyl-tRNA synthetase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JGF2_9FIRM
L3_079_000M1_scaffold_86_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15138..16364)
DNA (1227bp) protein (409aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Argininosuccinate synthase n=4 Tax=Eubacterium RepID=ASSY_EUBR3
L3_079_000M1_scaffold_86_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16572..17696
DNA (1125bp) protein (375aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
N-acetyl-gamma-glutamyl-phosphate reductase n=3 Tax=Eubacterium rectale RepID=C4Z9D0_EUBR3
argC; N-acetyl-gamma-glutamyl-phosphate reductase
L3_079_000M1_scaffold_86_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17780..18244
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6USF9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75353.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_86_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18256..19158
DNA (903bp) protein (301aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Acetylglutamate kinase n=3 Tax=Eubacterium rectale RepID=C4Z9D2_EUBR3
acetylglutamate kinase
L3_079_000M1_scaffold_86_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19148..20365
DNA (1218bp) protein (406aa)
acetylornithine aminotransferase apoenzyme (EC:2.6.1.11)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107, ECO:0000313|EMBL:CBK90306.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Acetylornithine aminotransferase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4G6_9FIRM
L3_079_000M1_scaffold_86_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20423..21130
DNA (708bp) protein (236aa)
Competence protein ComEA helix-hairpin-helix repeat region n=2 Tax=Eubacterium RepID=D4JLP7_9FIRM
competence protein ComEA helix-hairpin-helix repeat region
Competence protein ComEA helix-hairpin-helix repeat region {ECO:0000313|EMBL:CBK94544.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_86_18
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21141..21833
DNA (693bp) protein (231aa)
Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=4 Tax=Eubacterium RepID=C4Z9D5_EUBR3
response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain {ECO:0000313|EMBL:CDC73670.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_079_000M1_scaffold_86_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21855..23306
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBK94542.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Signal transduction histidine kinase n=4 Tax=Eubacterium RepID=C4Z9D6_EUBR3
signal transduction histidine kinase
L3_079_000M1_scaffold_86_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23275..24261
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9D7_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75359.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_86_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24304..26667
DNA (2364bp) protein (788aa)
Putative integral membrane protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9D8_EUBR3
putative integral membrane protein
Putative integral membrane protein {ECO:0000313|EMBL:ACR75360.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_86_22
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26648..27658
DNA (1011bp) protein (337aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:CBK90311.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBK90311.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
DNA polymerase III, delta subunit n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4H1_9FIRM
L3_079_000M1_scaffold_86_23
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27743..28006)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TV31_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
rpsT; 30S ribosomal protein S20
L3_079_000M1_scaffold_86_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28187..29098
DNA (912bp) protein (304aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Germination protease n=2 Tax=Eubacterium RepID=C4Z9E1_EUBR3
germination protease
L3_079_000M1_scaffold_86_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29170..30267
DNA (1098bp) protein (366aa)
Stage II sporulation protein P n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4H2_9FIRM
stage II sporulation protein P
Stage II sporulation protein P {ECO:0000313|EMBL:CBK90312.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_079_000M1_scaffold_86_26
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30331..32142
DNA (1812bp) protein (604aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Elongation factor 4 n=4 Tax=Eubacterium RepID=LEPA_EUBR3
GTP-binding protein LepA
L3_079_000M1_scaffold_86_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32151..33344
DNA (1194bp) protein (398aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CBK94537.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CBK94537.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JLP0_9FIRM
L3_079_000M1_scaffold_86_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33358..34107
DNA (750bp) protein (250aa)
Segregation and condensation protein A n=2 Tax=Eubacterium RepID=C4Z9E5_EUBR3
segregation and condensation protein A
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_079_000M1_scaffold_86_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34125..34688
DNA (564bp) protein (188aa)
Segregation and condensation protein B n=4 Tax=Eubacterium RepID=SCPB_EUBR3
putative transcriptional regulator
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_079_000M1_scaffold_86_30
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34770..35981
DNA (1212bp) protein (404aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9E7_EUBR3
serine-type D-Ala-D-Ala carboxypeptidase
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ACR75369.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Displaying items 1-30 of 115 in total

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