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L3_079_000M1_scaffold_183

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Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_183_1
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1318
DNA (1317bp) protein (439aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=2 Tax=Dorea RepID=A6BEM3_9FIRM
L3_079_000M1_scaffold_183_2
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1452..2309
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64061.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_079_000M1_scaffold_183_3
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2434..3594
DNA (1161bp) protein (387aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18008.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_079_000M1_scaffold_183_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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3594..4070
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18010.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_079_000M1_scaffold_183_5
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4197..5660
DNA (1464bp) protein (488aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase n=2 Tax=Dorea RepID=A6BEL9_9FIRM
L3_079_000M1_scaffold_183_6
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5670..7511
DNA (1842bp) protein (614aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
UvrD/REP helicase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL8_9FIRM
L3_079_000M1_scaffold_183_7
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7494..7805)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64055.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Protein of unknown function (DUF1292).
L3_079_000M1_scaffold_183_8
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7948..8967
DNA (1020bp) protein (340aa)
Sugar-binding domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL6_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDM64056.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_079_000M1_scaffold_183_9
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8997..10754
DNA (1758bp) protein (586aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Putative glycogen debranching enzyme GlgX n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL5_9FIRM
Putative glycogen debranching enzyme GlgX {ECO:0000313|EMBL:EDM64054.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_079_000M1_scaffold_183_10
unknown

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10811..10981
DNA (171bp) protein (57aa)

This feature has no annotations

L3_079_000M1_scaffold_183_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10996..11259
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18016.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_079_000M1_scaffold_183_12
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11745..13523
DNA (1779bp) protein (593aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL3_9FIRM
L3_079_000M1_scaffold_183_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13563..14672
DNA (1110bp) protein (370aa)
RNA polymerase sigma factor SigA n=2 Tax=Dorea RepID=A6BEL2_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_079_000M1_scaffold_183_14
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14687..15382
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64050.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Predicted SAM-dependent methyltransferase
L3_079_000M1_scaffold_183_15
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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15402..16196
DNA (795bp) protein (265aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Dorea RepID=A6BEL0_9FIRM
conserved hypothetical protein TIGR00486
L3_079_000M1_scaffold_183_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16236..17903
DNA (1668bp) protein (556aa)
Uridine kinase (EC:2.7.1.48)
Uncharacterized protein n=2 Tax=Dorea RepID=R7FU17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18023.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_079_000M1_scaffold_183_17
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18039..19136)
DNA (1098bp) protein (366aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=2 Tax=Dorea RepID=A6BEK7_9FIRM
L3_079_000M1_scaffold_183_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19362..20921
DNA (1560bp) protein (520aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Dorea longicatena CAG:42 RepID=R7FT54_9FIRM
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:CDE18025.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family
L3_079_000M1_scaffold_183_19
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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20941..22074
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=2 Tax=Dorea RepID=A6BEK5_9FIRM
L3_079_000M1_scaffold_183_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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22165..22473
DNA (309bp) protein (103aa)
Preprotein translocase YajC subunit n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWC7_9FIRM
Preprotein translocase YajC subunit {ECO:0000313|EMBL:CDE18027.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
preprotein translocase, YajC subunit
L3_079_000M1_scaffold_183_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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22777..25029
DNA (2253bp) protein (751aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EDM64042.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EDM64042.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEK3_9FIRM
L3_079_000M1_scaffold_183_22
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25210..25950
DNA (741bp) protein (247aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Pyruvate formate-lyase 1-activating enzyme n=2 Tax=Dorea RepID=R7FWD6_9FIRM
pyruvate formate-lyase activating enzyme
L3_079_000M1_scaffold_183_23
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26336..27421
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEJ9_9FIRM
L3_079_000M1_scaffold_183_24
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27502..29175
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEJ8_9FIRM
L3_079_000M1_scaffold_183_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29199..30884
DNA (1686bp) protein (562aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWE1_9FIRM
L3_079_000M1_scaffold_183_26
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30921..32003
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEJ6_9FIRM
L3_079_000M1_scaffold_183_27
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32006..33169
DNA (1164bp) protein (388aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EDM64034.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EDM64034.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=2 Tax=Dorea RepID=A6BEJ5_9FIRM
L3_079_000M1_scaffold_183_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33272..34705
DNA (1434bp) protein (478aa)
Polysaccharide deacetylase n=2 Tax=Dorea RepID=A6BEJ4_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CDE18045.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Predicted xylanase/chitin deacetylase
L3_079_000M1_scaffold_183_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34786..35961)
DNA (1176bp) protein (392aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=2 Tax=Dorea RepID=A6BEJ3_9FIRM
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:CDE18046.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_079_000M1_scaffold_183_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36122..37450
DNA (1329bp) protein (443aa)
GTPase Der n=2 Tax=Dorea RepID=A6BEJ2_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ribosome-associated GTPase EngA
Displaying items 1-30 of 70 in total

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