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L3_079_000M1_scaffold_456

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_456_1
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..178
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62097.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_079_000M1_scaffold_456_2
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

783..1235
DNA (453bp) protein (151aa)
Hsp20/alpha crystallin family protein n=2 Tax=Dorea RepID=A6BJL5_9FIRM
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:CDE17217.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
heat shock protein Hsp20
L3_079_000M1_scaffold_456_3
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1386..3980
DNA (2595bp) protein (865aa)
ATP-dependent chaperone protein ClpB n=2 Tax=Dorea RepID=A6BJL6_9FIRM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
ATP-dependent chaperone ClpB
L3_079_000M1_scaffold_456_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3971..5158
DNA (1188bp) protein (396aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Dorea longicatena CAG:42 RepID=R7FPJ7_9FIRM
L3_079_000M1_scaffold_456_5
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5356..6231
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BJL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62101.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_079_000M1_scaffold_456_6
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6585..7802)
DNA (1218bp) protein (406aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Dorea longicatena CAG:42 RepID=R7FU16_9FIRM
L3_079_000M1_scaffold_456_7
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7929..9392
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=2 Tax=Dorea RepID=A6BJM0_9FIRM
L3_079_000M1_scaffold_456_8
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9393..11621
DNA (2229bp) protein (743aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Primosomal protein N n=2 Tax=Dorea RepID=A6BJM1_9FIRM
primosomal protein N (replication factor Y) - superfamily II helicase
L3_079_000M1_scaffold_456_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11643..12116
DNA (474bp) protein (158aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=2 Tax=Dorea RepID=A6BJM2_9FIRM
L3_079_000M1_scaffold_456_10
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12118..13068
DNA (951bp) protein (317aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=2 Tax=Dorea RepID=A6BJM3_9FIRM
L3_079_000M1_scaffold_456_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13145..13852
DNA (708bp) protein (236aa)
Putative neutral zinc metallopeptidase n=2 Tax=Dorea RepID=R7FRV9_9FIRM
Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:CDE17228.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
putative Zn-dependent protease
L3_079_000M1_scaffold_456_12
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13920..15230
DNA (1311bp) protein (437aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJM5_9FIRM
16S rRNA methyltransferase B
L3_079_000M1_scaffold_456_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15223..16293
DNA (1071bp) protein (357aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJM6_9FIRM
L3_079_000M1_scaffold_456_14
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16271..17014
DNA (744bp) protein (248aa)
Serine/threonine phosphatase stp {ECO:0000313|EMBL:EDM62110.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EDM62110.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Serine/threonine protein phosphatase (EC:3.1.3.16)
Serine/threonine phosphatase stp n=2 Tax=Dorea RepID=A6BJM7_9FIRM
L3_079_000M1_scaffold_456_15
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17008..19122
DNA (2115bp) protein (705aa)
PASTA domain./Protein kinase domain. (EC:2.7.11.1)
Kinase domain protein n=2 Tax=Dorea RepID=R7FRW8_9FIRM
Kinase domain protein {ECO:0000313|EMBL:CDE17233.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_079_000M1_scaffold_456_16
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19129..20007
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Dorea RepID=A6BJM9_9FIRM
L3_079_000M1_scaffold_456_17
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20007..20672
DNA (666bp) protein (222aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJN0_9FIRM
L3_079_000M1_scaffold_456_18
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20665..21324
DNA (660bp) protein (220aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EDM62114.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EDM62114.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJN1_9FIRM
L3_079_000M1_scaffold_456_19
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21515..22615
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=2 Tax=Dorea RepID=A6BJN2_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
GTP-binding protein YchF
L3_079_000M1_scaffold_456_20
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22740..23618
DNA (879bp) protein (293aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJN3_9FIRM
L3_079_000M1_scaffold_456_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23713..24444)
DNA (732bp) protein (244aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJN4_9FIRM
L3_079_000M1_scaffold_456_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24725..25414
DNA (690bp) protein (230aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Putative N-acetylmannosamine-6-phosphate epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=2 Tax=Dorea RepID=A6BJN5_9FIRM
L3_079_000M1_scaffold_456_23
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25488..26405
DNA (918bp) protein (306aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.1.3.3)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=3 Tax=Lachnospiraceae RepID=D4M6K8_9FIRM
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:CDE19401.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_079_000M1_scaffold_456_24
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26455..27960
DNA (1506bp) protein (502aa)
Transporter SSS family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWY9_9FIRM
Transporter SSS family {ECO:0000313|EMBL:CDE19400.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Na+/proline symporter
L3_079_000M1_scaffold_456_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27978..28427
DNA (450bp) protein (150aa)
YhcH/YjgK/YiaL family protein n=2 Tax=Dorea RepID=R7FY16_9FIRM
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:CDE19398.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_079_000M1_scaffold_456_26
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28520..29401
DNA (882bp) protein (294aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.60)
ROK family protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJN9_9FIRM
ROK family protein {ECO:0000313|EMBL:EDM62122.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_079_000M1_scaffold_456_27
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29440..30276
DNA (837bp) protein (279aa)
Transcriptional regulators n=1 Tax=Dorea longicatena CAG:42 RepID=R7G002_9FIRM
Transcriptional regulators {ECO:0000313|EMBL:CDE19267.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Transcriptional regulators
L3_079_000M1_scaffold_456_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30324..31475
DNA (1152bp) protein (384aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FX82_9FIRM
L3_079_000M1_scaffold_456_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31519..32142
DNA (624bp) protein (208aa)
GDSL-like protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWP8_9FIRM
GDSL-like protein {ECO:0000313|EMBL:CDE19265.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Lysophospholipase L1 and related esterases
L3_079_000M1_scaffold_456_30
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32613..33836
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJP3_9FIRM
Displaying items 1-30 of 49 in total

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