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L3_079_000M1_scaffold_2322

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_2322_1
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(3..437)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GZP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY22870.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
hypothetical protein
L3_079_000M1_scaffold_2322_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(459..776)
DNA (318bp) protein (106aa)
Helix-turn-helix n=1 Tax=Clostridium sp. CAG:7 RepID=R5IBW5_9CLOT
Helix-turn-helix {ECO:0000313|EMBL:CCY39563.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Helix-turn-helix.
L3_079_000M1_scaffold_2322_3
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1226..1576)
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP40_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
iojap-related protein
L3_079_000M1_scaffold_2322_4
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1622..2203)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55172.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
conserved hypothetical protein TIGR00488
L3_079_000M1_scaffold_2322_5
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2203..2835)
DNA (633bp) protein (211aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Clostridium sp. CAG:43 RepID=R7A302_9CLOT
L3_079_000M1_scaffold_2322_6
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2880..3176)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AI10_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55174.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
conserved hypothetical protein TIGR00253
L3_079_000M1_scaffold_2322_7
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3251..4543)
DNA (1293bp) protein (431aa)
GTPase Obg n=1 Tax=Clostridium sp. CAG:43 RepID=R7AA08_9CLOT
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Obg family GTPase CgtA
L3_079_000M1_scaffold_2322_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4603..4893)
DNA (291bp) protein (97aa)
50S ribosomal protein L27 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP46_9CLOT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
LSU ribosomal protein L27P
L3_079_000M1_scaffold_2322_9
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4897..5226)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B090_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55177.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Predicted ribosomal protein
L3_079_000M1_scaffold_2322_10
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5232..5540)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Clostridium sp. CAG:43 RepID=R7A308_9CLOT
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
LSU ribosomal protein L21P
L3_079_000M1_scaffold_2322_11
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5852..7162)
DNA (1311bp) protein (437aa)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
peptidase T. Metallo peptidase. MEROPS family M20B (EC:3.4.11.4)
Peptidase T n=1 Tax=Clostridium sp. CAG:43 RepID=R7AMV7_9CLOT
L3_079_000M1_scaffold_2322_12
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7159..7704)
DNA (546bp) protein (182aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Holliday junction resolvase RecU n=1 Tax=Clostridium sp. CAG:43 RepID=R7AFV6_9CLOT
Recombination protein U
L3_079_000M1_scaffold_2322_13
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7753..8751)
DNA (999bp) protein (333aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7B594_9CLOT
Pseudouridine synthase {ECO:0000313|EMBL:CDD59701.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_079_000M1_scaffold_2322_14
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8770..9339)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AMV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD59700.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_2322_15
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9397..10161)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B722_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD59699.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
short-chain dehydrogenase/reductase SDR
L3_079_000M1_scaffold_2322_16
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10229..12235)
DNA (2007bp) protein (669aa)
UPF0313 protein HMPREF9474_01915 n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GLX0_CLOSY
UPF0313 protein HMPREF9474_01915 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Fe-S oxidoreductase
L3_079_000M1_scaffold_2322_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12273..13742)
DNA (1470bp) protein (490aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IG97_9CLOT
pseudouridine synthase family/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_079_000M1_scaffold_2322_18
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13742..13987)
DNA (246bp) protein (82aa)
NOL1/NOP2/sun family protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B7V0_9CLOT
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:CDD60174.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
NOL1/NOP2/sun family.
Displaying 18 items

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