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L3_079_000M1_scaffold_1404

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1404_1
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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722..1453
DNA (732bp) protein (244aa)
30S ribosomal protein S2 n=1 Tax=Clostridium sp. CAG:43 RepID=R7ANG1_9CLOT
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
SSU ribosomal protein S2P
L3_079_000M1_scaffold_1404_2
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1578..2510
DNA (933bp) protein (311aa)
Elongation factor Ts n=1 Tax=Clostridium sp. CAG:43 RepID=R7A9D7_9CLOT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
translation elongation factor Ts (EF-Ts)
L3_079_000M1_scaffold_1404_3
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3468..4004
DNA (537bp) protein (179aa)
ThiW protein n=2 Tax=Clostridiales RepID=D7GVF6_9FIRM
thiW protein
ThiW protein {ECO:0000313|EMBL:CCY09257.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_079_000M1_scaffold_1404_4
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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3997..4818
DNA (822bp) protein (274aa)
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Hydroxyethylthiazole kinase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GVF7_9FIRM
L3_079_000M1_scaffold_1404_5
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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4873..5508
DNA (636bp) protein (212aa)
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Thiamine-phosphate synthase n=2 Tax=Clostridiales RepID=D7GVG7_9FIRM
L3_079_000M1_scaffold_1404_6
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5691..6497
DNA (807bp) protein (269aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWM8_9CLOT
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CCY09238.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_079_000M1_scaffold_1404_7
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6494..7156
DNA (663bp) protein (221aa)
Putative transcription activator (EC:3.5.99.2)
Putative transcription activator n=1 Tax=Clostridium sp. CAG:81 RepID=R5G9R4_9CLOT
Putative transcription activator {ECO:0000313|EMBL:CCY09236.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_079_000M1_scaffold_1404_8
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7159..7911
DNA (753bp) protein (251aa)
ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWM1_9CLOT
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component {ECO:0000313|EMBL:CCY09233.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_079_000M1_scaffold_1404_9
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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7911..8687
DNA (777bp) protein (259aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GVH1_9FIRM
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:CBL41813.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_079_000M1_scaffold_1404_10
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8924..9991
DNA (1068bp) protein (356aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components n=1 Tax=Clostridium sp. CAG:81 RepID=R5G9R0_9CLOT
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components {ECO:0000313|EMBL:CCY09231.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_079_000M1_scaffold_1404_11
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10383..11456
DNA (1074bp) protein (358aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AHE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD54944.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_079_000M1_scaffold_1404_12
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11706..13025
DNA (1320bp) protein (440aa)
Transporter n=1 Tax=Clostridium sp. CAG:43 RepID=R7A2B6_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Na+-dependent transporters of the SNF family
L3_079_000M1_scaffold_1404_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13381..14037
DNA (657bp) protein (219aa)
50S ribosomal protein L21 domain protein n=4 Tax=Clostridium RepID=E9SM82_CLOSY
50S ribosomal protein L21 domain protein {ECO:0000313|EMBL:ERI77549.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_079_000M1_scaffold_1404_14
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14492..15112)
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FJC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF03514.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L3_079_000M1_scaffold_1404_15
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15254..16645
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZ40_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD54942.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
RNA methylase
L3_079_000M1_scaffold_1404_16
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16642..17529)
DNA (888bp) protein (296aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7ANF4_9CLOT
L3_079_000M1_scaffold_1404_17
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17742..18254
DNA (513bp) protein (171aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Clostridium sp. CAG:43 RepID=R7A9D5_9CLOT
L3_079_000M1_scaffold_1404_18
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18293..19324
DNA (1032bp) protein (344aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AHE2_9CLOT
L3_079_000M1_scaffold_1404_19
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19318..19911
DNA (594bp) protein (198aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A2B1_9CLOT
L3_079_000M1_scaffold_1404_20
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19922..21196
DNA (1275bp) protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZI3_9CLOT
L3_079_000M1_scaffold_1404_21
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21387..21926
DNA (540bp) protein (180aa)
Rubredoxin n=1 Tax=Clostridium sp. CAG:43 RepID=R7ANE7_9CLOT
Rubredoxin {ECO:0000313|EMBL:CDD54936.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Rubrerythrin
L3_079_000M1_scaffold_1404_22
unknown

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22043..22168
DNA (126bp) protein (42aa)

This feature has no annotations

L3_079_000M1_scaffold_1404_23
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22209..23567
DNA (1359bp) protein (453aa)
SH3 domain of the SH3b1 type n=1 Tax=Clostridium sp. CAG:43 RepID=R7A9C9_9CLOT
SH3 domain of the SH3b1 type {ECO:0000313|EMBL:CDD54935.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
NLP/P60-like protein
L3_079_000M1_scaffold_1404_24
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23604..24041
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AHD5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD54934.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_1404_25
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24222..25295
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A2A6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD54933.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_1404_26
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(25388..26305)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Veillonella sp. CAG:933 RepID=R5BPX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX56264.1}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
AraC family transcriptional regulator
L3_079_000M1_scaffold_1404_27
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26430..27401
DNA (972bp) protein (324aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Clostridium sp. CAG:81 RepID=R5FVR8_9CLOT
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CCY09150.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L3_079_000M1_scaffold_1404_28
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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27714..27785
DNA (72bp) protein (24aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R7DCT5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS25501.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Displaying 28 items

View Taxonomy