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L3_079_000M1_scaffold_1642

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1642_1
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1162)
DNA (1161bp) protein (387aa)
MATE efflux family protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J5B3_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CCY44231.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
putative efflux protein, MATE family
L3_079_000M1_scaffold_1642_2
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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comp(1413..2204)
DNA (792bp) protein (264aa)
Putative aldolase n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1B6T2_RHOOB
aldolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
L3_079_000M1_scaffold_1642_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2246..3076)
DNA (831bp) protein (277aa)
Putative aldolase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZPN2_9CLOT
Putative aldolase {ECO:0000313|EMBL:CDD45334.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
aldolase
L3_079_000M1_scaffold_1642_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3386..4888)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M0L7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64358.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_079_000M1_scaffold_1642_5
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4900..5349)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M931_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64357.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L3_079_000M1_scaffold_1642_6
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5359..6363)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M122_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64356.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_079_000M1_scaffold_1642_7
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6890..7648)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64354.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
regulatory protein IclR
L3_079_000M1_scaffold_1642_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7949..9169)
DNA (1221bp) protein (407aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP04_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDD60095.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
cell wall hydrolase/autolysin
L3_079_000M1_scaffold_1642_9
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9310..10389)
DNA (1080bp) protein (360aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5X6_9CLOT
L3_079_000M1_scaffold_1642_10
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10389..10826)
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5K3_9CLOT
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:CDD60102.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_079_000M1_scaffold_1642_11
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10891..12078)
DNA (1188bp) protein (396aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5U3_9CLOT
L3_079_000M1_scaffold_1642_12
unknown

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comp(12332..12466)
DNA (135bp) protein (45aa)

This feature has no annotations

L3_079_000M1_scaffold_1642_13
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12857..13795
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD60105.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_1642_14
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14066..15244)
DNA (1179bp) protein (393aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1 2.6.1.17 2.6.1.11)
Putative uncharacterized protein n=2 Tax=Clostridium RepID=G5F8N0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF07234.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L3_079_000M1_scaffold_1642_15
Bacillus stratosphericus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(15374..16621)
DNA (1248bp) protein (416aa)
Sodium:dicarboxylate symporter n=1 Tax=Bacillus stratosphericus LAMA 585 RepID=M5RC33_9BACI
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:EMI12857.1}; TaxID=1236481 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus stratosphericus LAMA 585.;"
putative sodium:dicarboxylate symporter
L3_079_000M1_scaffold_1642_16
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16895..17689)
DNA (795bp) protein (265aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Oxidoreductase short chain dehydrogenase/reductase family protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5M2P5_9CLOT
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CCY85823.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000M1_scaffold_1642_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17756..18685)
DNA (930bp) protein (310aa)
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (Catechol pathway) n=1 Tax=Clostridium sp. CAG:149 RepID=R5M2I1_9CLOT
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway) {ECO:0000313|EMBL:CBK76684.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Displaying 17 items

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