ggKbase home page

L3_079_000M1_scaffold_1779

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1779_1
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

309..752
DNA (444bp) protein (148aa)
N utilization substance protein B homolog n=1 Tax=Clostridium sp. CAG:43 RepID=R7AN37_9CLOT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
transcription antitermination factor NusB
L3_079_000M1_scaffold_1779_2
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

756..1967
DNA (1212bp) protein (404aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Clostridium sp. CAG:43 RepID=R7A809_9CLOT
exodeoxyribonuclease VII large subunit
L3_079_000M1_scaffold_1779_3
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2077..2286
DNA (210bp) protein (70aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Clostridium sp. CAG:43 RepID=R7B1J2_9CLOT
Exonuclease VII small subunit
L3_079_000M1_scaffold_1779_4
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2292..3182
DNA (891bp) protein (297aa)
Geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B0P3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD56921.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_079_000M1_scaffold_1779_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3244..5124
DNA (1881bp) protein (627aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FB15_9CLOT
deoxyxylulose-5-phosphate synthase
L3_079_000M1_scaffold_1779_6
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5167..6015
DNA (849bp) protein (283aa)
Hemolysin TlyA family protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B2N8_9CLOT
Hemolysin TlyA family protein {ECO:0000313|EMBL:CDD56912.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hemolysin TlyA family protein
L3_079_000M1_scaffold_1779_7
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6012..6881
DNA (870bp) protein (290aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Predicted sugar kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AEX9_9CLOT
L3_079_000M1_scaffold_1779_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6896..7345
DNA (450bp) protein (150aa)
Arginine repressor n=1 Tax=Clostridium sp. CAG:43 RepID=R7B0P0_9CLOT
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
transcriptional regulator, ArgR family
L3_079_000M1_scaffold_1779_9
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7405..9072
DNA (1668bp) protein (556aa)
DNA repair protein RecN n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SR81_CLOSY
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
DNA replication and repair protein RecN
L3_079_000M1_scaffold_1779_10
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9818..10525
DNA (708bp) protein (236aa)
AP2 domain n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWT7_9CLOT
AP2 domain {ECO:0000313|EMBL:CCY09303.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
AP2 domain.
L3_079_000M1_scaffold_1779_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10609..11316
DNA (708bp) protein (236aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GL38_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94422.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_079_000M1_scaffold_1779_12
unknown

Not on your lists

comp(11218..11445)
DNA (228bp) protein (76aa)

This feature has no annotations

L3_079_000M1_scaffold_1779_13
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11539..12327
DNA (789bp) protein (263aa)
Capsular exopolysaccharide family protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GL80_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF06985.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Capsular polysaccharide biosynthesis protein
L3_079_000M1_scaffold_1779_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12334..13053
DNA (720bp) protein (240aa)
Capsular exopolysaccharide family protein n=2 Tax=Clostridium symbiosum RepID=E7GL81_CLOSY
Putative tyrosine-protein kinase CpsD {ECO:0000313|EMBL:ERI76522.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
capsular exopolysaccharide family
L3_079_000M1_scaffold_1779_15
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13050..14078
DNA (1029bp) protein (343aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5F9E0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF06982.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
cell envelope-related function transcriptional attenuator common domain
L3_079_000M1_scaffold_1779_16
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14120..14758
DNA (639bp) protein (213aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=E9SU87_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94427.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_079_000M1_scaffold_1779_17
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15070..16530
DNA (1461bp) protein (487aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GBF7_9FIRM
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:CCY14675.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L3_079_000M1_scaffold_1779_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17212..17859
DNA (648bp) protein (216aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:CBL26456.1}; EC=1.1.1.22 {ECO:0000313|EMBL:CBL26456.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Nucleotide sugar dehydrogenase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5E4_9FIRM
Displaying 18 items

View Taxonomy