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L3_079_000M1_scaffold_1995

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_1995_1
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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255..1277
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZN8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55237.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
putative transporter
L3_079_000M1_scaffold_1995_2
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1406..1876)
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7APA2_9CLOT
riboflavin synthase beta chain
L3_079_000M1_scaffold_1995_3
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1921..3123)
DNA (1203bp) protein (401aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Clostridium sp. CAG:43 RepID=R7AI61_9CLOT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_079_000M1_scaffold_1995_4
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3139..3786)
DNA (648bp) protein (216aa)
Riboflavin synthase alpha subunit n=1 Tax=Clostridium sp. CAG:43 RepID=R7B1F6_9CLOT
Riboflavin synthase alpha subunit {ECO:0000313|EMBL:CDD55232.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
riboflavin synthase alpha chain
L3_079_000M1_scaffold_1995_5
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3834..4976)
DNA (1143bp) protein (381aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP97_9CLOT
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_079_000M1_scaffold_1995_6
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5469..6860)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55872.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
putative efflux protein, MATE family
L3_079_000M1_scaffold_1995_7
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7523..8884)
DNA (1362bp) protein (454aa)
Permeases n=1 Tax=Clostridium sp. CAG:43 RepID=R7AR22_9CLOT
Permeases {ECO:0000313|EMBL:CDD55871.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Permeases
L3_079_000M1_scaffold_1995_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8925..10202)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AC05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55870.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
RNA-binding protein AU-1/Ribonuclease E/G
L3_079_000M1_scaffold_1995_9
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10308..11114)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AK24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55869.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_1995_10
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11128..13041)
DNA (1914bp) protein (638aa)
Radical SAM domain-containing protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A4Y1_9CLOT
Radical SAM domain-containing protein {ECO:0000313|EMBL:CDD55868.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Fe-S oxidoreductase
L3_079_000M1_scaffold_1995_11
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13291..13614)
DNA (324bp) protein (108aa)
Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N8U6_9FIRM
Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:CDF09839.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
hypothetical protein
L3_079_000M1_scaffold_1995_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13697..15010)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZY48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35407.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
protein of unknown function DUF4143
L3_079_000M1_scaffold_1995_13
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15853..16152
DNA (300bp) protein (100aa)
MerR-family transcriptional regulator n=1 Tax=Clostridium sp. CAG:43 RepID=R7AK18_9CLOT
MerR-family transcriptional regulator {ECO:0000313|EMBL:CDD55864.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
Displaying 13 items

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