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L3_079_000M1_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000M1_scaffold_355_1
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(52..441)
DNA (390bp) protein (130aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. CAG:43 RepID=R7B250_9CLOT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
SSU ribosomal protein S9P
L3_079_000M1_scaffold_355_2
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(470..904)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AIC4_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
LSU ribosomal protein L13P
L3_079_000M1_scaffold_355_3
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1308..2117)
DNA (810bp) protein (270aa)
UPF0317 protein BN653_00100 n=1 Tax=Clostridium sp. CAG:43 RepID=R7ABD2_9CLOT
UPF0317 protein BN653_00100 {ECO:0000256|HAMAP-Rule:MF_01830}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_355_4
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2154..3251)
DNA (1098bp) protein (366aa)
Allophanate hydrolase n=1 Tax=Clostridium sp. CAG:43 RepID=R7B243_9CLOT
Allophanate hydrolase {ECO:0000313|EMBL:CDD58094.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
biotin-dependent carboxylase uncharacterized domain
L3_079_000M1_scaffold_355_5
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3254..3982)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B4C0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD58091.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
conserved hypothetical protein TIGR00370
L3_079_000M1_scaffold_355_6
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4206..5429)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B781_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD59799.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Mn2+ and Fe2+ transporters of the NRAMP family
L3_079_000M1_scaffold_355_7
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5454..6215)
DNA (762bp) protein (254aa)
UPF0271 protein BN653_00228 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AG32_9CLOT
UPF0271 protein BN653_00228 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Uncharacterized proteins, homologs of lactam utilization protein B
L3_079_000M1_scaffold_355_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6569..7933)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55126.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L3_079_000M1_scaffold_355_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8009..9325)
DNA (1317bp) protein (439aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BT79_CLOSY
Signal transduction histidine kinase
L3_079_000M1_scaffold_355_10
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9387..10814)
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AHX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55124.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Na+/proline symporter
L3_079_000M1_scaffold_355_11
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10817..11848)
DNA (1032bp) protein (344aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. CAG:43 RepID=R7A2V7_9CLOT
pseudouridylate synthase I
L3_079_000M1_scaffold_355_12
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11946..12746)
DNA (801bp) protein (267aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZD1_9CLOT
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_079_000M1_scaffold_355_13
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12743..13606)
DNA (864bp) protein (288aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Cobalt ABC transporter, ATP-binding protein n=4 Tax=Clostridium RepID=E9SJ87_CLOSY
cobalt transport protein ATP-binding subunit
L3_079_000M1_scaffold_355_14
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13609..14469)
DNA (861bp) protein (287aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AHX6_9CLOT
cobalt transport protein ATP-binding subunit
L3_079_000M1_scaffold_355_15
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14619..15614)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A2V2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55118.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_355_16
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15705..16361)
DNA (657bp) protein (219aa)
Maf-like protein BN653_00050 n=1 Tax=Clostridium sp. CAG:43 RepID=R7A2U2_9CLOT
Maf-like protein BN653_00050 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
maf protein
L3_079_000M1_scaffold_355_17
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16461..16922)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B1C9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55107.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_355_18
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17001..18446)
DNA (1446bp) protein (482aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
glycogen synthase (ADP-glucose) (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7ANY9_9CLOT
L3_079_000M1_scaffold_355_19
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18706..19374)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AE61_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD59073.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_355_20
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19582..20388)
DNA (807bp) protein (269aa)
Sporulation transcription factor Spo0A n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5Y9_9CLOT
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_079_000M1_scaffold_355_21
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21109..22416)
DNA (1308bp) protein (436aa)
stage IV sporulation protein B (EC:3.4.21.116)
Stage IV sporulation protein B n=1 Tax=Clostridium sp. CAG:43 RepID=R7B468_9CLOT
Stage IV sporulation protein B {ECO:0000313|EMBL:CDD59076.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_079_000M1_scaffold_355_22
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22807..23343)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AE66_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
LSU ribosomal protein L17P
L3_079_000M1_scaffold_355_23
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23522..24484)
DNA (963bp) protein (321aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sp. CAG:43 RepID=R7B408_9CLOT
DNA-directed RNA polymerase subunit alpha
L3_079_000M1_scaffold_355_24
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24611..25204)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5Z3_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
SSU ribosomal protein S4P
L3_079_000M1_scaffold_355_25
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25223..25624)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AL40_9CLOT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
SSU ribosomal protein S11P
L3_079_000M1_scaffold_355_26
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25700..26068)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Clostridium sp. CAG:43 RepID=R7B412_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
30S ribosomal protein S13
L3_079_000M1_scaffold_355_27
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26563..26781)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AL44_9CLOT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
translation initiation factor IF-1
L3_079_000M1_scaffold_355_28
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26783..27055)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AE78_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD59093.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_079_000M1_scaffold_355_29
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27309..28058)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AL50_9CLOT
L3_079_000M1_scaffold_355_30
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28062..28706)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Clostridium sp. CAG:43 RepID=R7B4W5_9CLOT
Displaying items 1-30 of 68 in total

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