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L3_079_029G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 176 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_029G1_scaffold_55_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(472..1203)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A8N5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12033.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
beta-glycosidase
L3_079_029G1_scaffold_55_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1588..5046)
DNA (3459bp) protein (1153aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YER4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12032.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_55_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5053..7935)
DNA (2883bp) protein (961aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZKK6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12031.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_079_029G1_scaffold_55_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8115..8672)
DNA (558bp) protein (186aa)
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZL68_9PORP
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKN12030.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, Bacteroides expansion family 1
L3_079_029G1_scaffold_55_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9034..10656)
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z8T2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12029.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_55_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10669..14064)
DNA (3396bp) protein (1132aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A8N0_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN12028.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
putative outer membrane protein probably involved in nutrient binding
L3_079_029G1_scaffold_55_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14184..15182)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YER0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12027.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
anti-sigma factor
L3_079_029G1_scaffold_55_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15515..15862
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZKK1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12026.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_079_029G1_scaffold_55_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16496..17056)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z8S7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12024.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_55_10
unknown

Not on your lists

18396..18602
DNA (207bp) protein (69aa)

This feature has no annotations

L3_079_029G1_scaffold_55_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18678..18971
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A8M5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12023.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_55_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18983..19276
DNA (294bp) protein (98aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YEQ6_9PORP
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EKN12022.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_55_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20495..20926)
DNA (432bp) protein (144aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AAY3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87959.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L3_079_029G1_scaffold_55_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21380..23647
DNA (2268bp) protein (756aa)
TrkA C-terminal domain protein n=2 Tax=Parabacteroides merdae RepID=A7AAY1_9PORP
TrkA C-terminal domain protein {ECO:0000313|EMBL:EDN87957.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
sodium/proton antiporter
L3_079_029G1_scaffold_55_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24255..24368
DNA (114bp) protein (38aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AAX9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12373.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_029G1_scaffold_55_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24502..27630
DNA (3129bp) protein (1043aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSL9_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD12375.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_029G1_scaffold_55_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27642..29471
DNA (1830bp) protein (610aa)
SusD family protein n=3 Tax=Parabacteroides RepID=R6Y1M0_9PORP
SusD family protein {ECO:0000313|EMBL:CDD12377.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_029G1_scaffold_55_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29509..32271
DNA (2763bp) protein (921aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WMH5_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD12378.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L3_079_029G1_scaffold_55_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32295..33986
DNA (1692bp) protein (564aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSM4_9PORP
SusD family protein {ECO:0000313|EMBL:CDD12380.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_079_029G1_scaffold_55_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34035..35639
DNA (1605bp) protein (535aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AAX4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87950.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
xylose ABC transporter
L3_079_029G1_scaffold_55_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35795..39880
DNA (4086bp) protein (1362aa)
Response regulator receiver domain protein n=2 Tax=Parabacteroides merdae RepID=A7AAX3_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EDN87949.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system sensor histidine kinase/response regulator
L3_079_029G1_scaffold_55_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40047..40430
DNA (384bp) protein (128aa)
Transcriptional regulator GntR family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZQ5_9PORP
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDD12389.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative transcriptional regulator
L3_079_029G1_scaffold_55_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40433..41320
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSN5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12390.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
membrane protease subunit, stomatin/prohibitin
L3_079_029G1_scaffold_55_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41352..42269
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X7S2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12391.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_029G1_scaffold_55_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42419..43708)
DNA (1290bp) protein (430aa)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WMI9_9PORP
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CDD12393.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
O-acetylhomoserine (thiol)-lyase
L3_079_029G1_scaffold_55_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43884..44354
DNA (471bp) protein (157aa)
Transcriptional regulator, AsnC family n=3 Tax=Parabacteroides RepID=A7AHG7_9PORP
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EDN85784.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L3_079_029G1_scaffold_55_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44383..45399)
DNA (1017bp) protein (339aa)
Oxidoreductase NAD-binding domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y1P0_9PORP
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:CDD12397.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
dehydrogenase
L3_079_029G1_scaffold_55_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45501..46673)
DNA (1173bp) protein (391aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZR9_9PORP
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:CDD12399.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
aminotransferase
L3_079_029G1_scaffold_55_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(46733..48799)
DNA (2067bp) protein (689aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=2 Tax=Parabacteroides merdae RepID=A7AHG4_9PORP
L3_079_029G1_scaffold_55_30
Bacteroides helcogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48886..50547)
DNA (1662bp) protein (554aa)
Putative lipoprotein n=1 Tax=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) RepID=E6SSD6_BACT6
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ADV45187.1}; Flags: Precursor;; TaxID=693979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P; 36-108).;"
Displaying items 1-30 of 176 in total

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