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L3_079_029G1_scaffold_130

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_029G1_scaffold_130_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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646..1467
DNA (822bp) protein (274aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AA82_9PORP
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EDN88539.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_079_029G1_scaffold_130_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1477..4059
DNA (2583bp) protein (861aa)
beta-galactosidase (EC:3.2.1.23)
Glycosyl hydrolase family 2, sugar binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AA82_9PORP
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EDN88539.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_079_029G1_scaffold_130_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4193..5068
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YG89_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12602.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_130_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5205..5897
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y739_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14237.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
demethylmenaquinone methyltransferase
L3_079_029G1_scaffold_130_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5927..7096
DNA (1170bp) protein (390aa)
galactonate dehydratase (EC:4.2.1.6)
Mandelate racemase/muconate lactonizing enzyme N-terminal domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSC6_9PORP
Mandelate racemase/muconate lactonizing enzyme N-terminal domain protein {ECO:0000313|EMBL:CDD14238.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_029G1_scaffold_130_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7102..7893
DNA (792bp) protein (264aa)
short-chain dehydrogenase/reductase (EC:1.-.-.-)
Oxidoreductase short chain dehydrogenase/reductase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X519_9PORP
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD14239.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_029G1_scaffold_130_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7906..9459
DNA (1554bp) protein (518aa)
Transporter SSS family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WY38_9PORP
Transporter SSS family {ECO:0000313|EMBL:CDD14240.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
SSS sodium solute transporter superfamily
L3_079_029G1_scaffold_130_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9491..12490
DNA (3000bp) protein (1000aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
beta-galactosidase (EC:3.2.1.23)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B2V0_9PORP
L3_079_029G1_scaffold_130_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12666..13835)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6C256_9PORP
Peptidase C1-like family {ECO:0000313|EMBL:CDD14243.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
aminopeptidase
L3_079_029G1_scaffold_130_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13920..15530)
DNA (1611bp) protein (537aa)
Peptidase, C69 family n=3 Tax=Parabacteroides RepID=A7AA72_9PORP
Peptidase, C69 family {ECO:0000313|EMBL:EDN88529.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
secreted peptidase
L3_079_029G1_scaffold_130_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15658..17232
DNA (1575bp) protein (525aa)
Glycosyl hydrolase family 20, catalytic domain protein n=2 Tax=Parabacteroides merdae RepID=A7AA71_9PORP
Glycosyl hydrolase family 20, catalytic domain protein {ECO:0000313|EMBL:EDN88528.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
nahA; putative exported beta-hexosaminidase
L3_079_029G1_scaffold_130_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17263..17550)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA70_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88527.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_079_029G1_scaffold_130_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17804..18142
DNA (339bp) protein (113aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AA68_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14246.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_079_029G1_scaffold_130_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18187..19953)
DNA (1767bp) protein (589aa)
DEAD/DEAH box helicase n=4 Tax=Parabacteroides RepID=A7AA67_9PORP
DEAD/DEAH box helicase {ECO:0000313|EMBL:CDD14247.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATP-dependent RNA helicase
L3_079_029G1_scaffold_130_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20079..21143)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ABC9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12993.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_079_029G1_scaffold_130_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21222..22151)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YHZ6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13242.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
fructokinase
L3_079_029G1_scaffold_130_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22157..22774)
DNA (618bp) protein (206aa)
Sugar isomerase, KpsF/GutQ family n=4 Tax=Parabacteroides RepID=A7AA63_9PORP
Sugar isomerase, KpsF/GutQ family {ECO:0000313|EMBL:EDN88519.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
sugar isomerase
L3_079_029G1_scaffold_130_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22803..24125
DNA (1323bp) protein (441aa)
Peptidase M16 inactive domain protein n=3 Tax=Parabacteroides merdae RepID=A7AA62_9PORP
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EDN88520.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
zinc protease YmxG
L3_079_029G1_scaffold_130_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24133..25533)
DNA (1401bp) protein (467aa)
Amino acid carrier protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA61_9PORP
Amino acid carrier protein {ECO:0000313|EMBL:EDN88518.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
amino acid carrier protein
L3_079_029G1_scaffold_130_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25679..26185
DNA (507bp) protein (169aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AA60_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88517.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_079_029G1_scaffold_130_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26605..27966
DNA (1362bp) protein (454aa)
Outer membrane efflux protein n=2 Tax=Parabacteroides merdae RepID=A7AA59_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN88516.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative outer membrane protein
L3_079_029G1_scaffold_130_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27978..29240
DNA (1263bp) protein (421aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZP24_9PORP
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKN13236.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter permease
L3_079_029G1_scaffold_130_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29240..31093
DNA (1854bp) protein (618aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZPL5_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN88514.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative ABC transporter permease
L3_079_029G1_scaffold_130_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31071..31586
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZPL5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13235.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
putative FtsX-related transporter permease
L3_079_029G1_scaffold_130_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31603..32265
DNA (663bp) protein (221aa)
ABC transporter, ATP-binding protein n=2 Tax=Parabacteroides merdae RepID=A7AA56_9PORP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN88513.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative ABC transport system ATP-binding protein
L3_079_029G1_scaffold_130_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32294..34717
DNA (2424bp) protein (808aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6AC20_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13233.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
putative FtsX-related transmembrane transport protein
L3_079_029G1_scaffold_130_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34858..35265)
DNA (408bp) protein (136aa)
Phenylacetic acid degradation protein PaaD n=3 Tax=Parabacteroides merdae RepID=K5YHW0_9PORP
Putative phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:EDN88511.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phenylacetic acid degradation protein
L3_079_029G1_scaffold_130_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35357..36835)
DNA (1479bp) protein (493aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Parabacteroides merdae RepID=A7AA53_9PORP
L3_079_029G1_scaffold_130_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36939..38747
DNA (1809bp) protein (603aa)
Alpha-1 3-galactosidase B n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSM6_9PORP
Alpha-1 3-galactosidase B {ECO:0000313|EMBL:CDD14353.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATP/GTP-binding site
L3_079_029G1_scaffold_130_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38849..40690)
DNA (1842bp) protein (614aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Parabacteroides merdae RepID=A7AA51_9PORP
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Displaying items 1-30 of 88 in total

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