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L3_079_029G1_scaffold_343

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_029G1_scaffold_343_1
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..308)
DNA (306bp) protein (102aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036A7312
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:CDC78939.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
L3_079_029G1_scaffold_343_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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507..1427
DNA (921bp) protein (307aa)
S1 RNA binding domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N7C5_9CLOT
S1 RNA binding domain protein {ECO:0000313|EMBL:EJF40402.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Ribosomal protein S1
L3_079_029G1_scaffold_343_3
unknown

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comp(1380..1571)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_079_029G1_scaffold_343_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1571..1999)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Treponema medium ATCC 700293 RepID=S3K6W2_TREMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83551.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_079_029G1_scaffold_343_5
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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2124..2447
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=3474276 bin=GWF2_Clostridiales_38_85 species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
transcriptional regulator PadR family
Tax=GWF2_Clostridiales_38_85_curated
L3_079_029G1_scaffold_343_6
Eggerthella lenta, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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2434..2694
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) PF2_EGGLE">RepID=C8WPF2_EGGLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGI71275.1}; TaxID=742768 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella lenta 1_1_60AFAA.;"
L3_079_029G1_scaffold_343_7
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2695..3042
DNA (348bp) protein (116aa)
Putative membrane protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LG86_ACEWD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AFA49562.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_079_029G1_scaffold_343_8
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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3045..3965
DNA (921bp) protein (307aa)
Uncharacterized protein id=3474272 bin=GWF2_Clostridiales_38_85 species=Enterococcus pallens genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_079_029G1_scaffold_343_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4053..6524)
DNA (2472bp) protein (824aa)
Negative regulator of genetic competence ClpC/MecB n=1 Tax=Clostridium sp. MSTE9 RepID=J0N170_9CLOT
Negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:EJF40494.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ATPases with chaperone activity, ATP-binding subunit
L3_079_029G1_scaffold_343_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6568..7596)
DNA (1029bp) protein (343aa)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Arginine kinase (EC:2.7.3.3)
Putative ATP:guanido phosphotransferase HMPREF1141_1642 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H4E4_9CLOT
L3_079_029G1_scaffold_343_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7625..8143)
DNA (519bp) protein (173aa)
UvrB/UvrC domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H5K0_9CLOT
UvrB/UvrC domain protein {ECO:0000313|EMBL:EJF40533.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Uncharacterized protein with conserved CXXC pairs
L3_079_029G1_scaffold_343_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8162..8614)
DNA (453bp) protein (151aa)
Transcriptional regulator CtsR n=1 Tax=Clostridium sp. MSTE9 RepID=J0N1A9_9CLOT
Transcriptional regulator CtsR {ECO:0000313|EMBL:EJF40534.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Transcriptional repressor of class III stress genes
L3_079_029G1_scaffold_343_13
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9320..9841)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI0002E1AD2C
HD superfamily hydrolase {ECO:0000313|EMBL:CDL92962.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
metal-dependent phosphohydrolase HD sub domain-containing protein
L3_079_029G1_scaffold_343_14
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(9972..10646)
DNA (675bp) protein (225aa)
UPI0002EFC568 related cluster n=1 Tax=unknown RepID=UPI0002EFC568
Uncharacterized protein {ECO:0000313|EMBL:CDB02743.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
hypothetical protein
L3_079_029G1_scaffold_343_15
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11009..11836
DNA (828bp) protein (276aa)
Phosphomethylpyrimidine kinase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TAC3_9CLOT
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EGD48466.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
phosphomethylpyrimidine kinase
L3_079_029G1_scaffold_343_16
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11826..13139
DNA (1314bp) protein (438aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Phosphomethylpyrimidine synthase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FPN5_9CLOT
thiamine biosynthesis protein ThiC
L3_079_029G1_scaffold_343_17
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13145..13798
DNA (654bp) protein (218aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Thiamine-phosphate synthase n=1 Tax=Clostridium sp. CAG:964 RepID=R6UJB5_9CLOT
thiamine-phosphate pyrophosphorylase
L3_079_029G1_scaffold_343_18
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13788..14432
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GUJ5_CLOSY
Putative hydrolase {ECO:0000313|EMBL:KAJ53594.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_079_029G1_scaffold_343_19
unknown

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14592..15122
DNA (531bp) protein (177aa)

This feature has no annotations

L3_079_029G1_scaffold_343_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15106..16698)
DNA (1593bp) protein (531aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WP94_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJF38236.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative ABC transport system ATP-binding protein
L3_079_029G1_scaffold_343_21
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16783..18078)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VM68_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ50565.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L3_079_029G1_scaffold_343_22
unknown

Not on your lists

comp(18106..18279)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_079_029G1_scaffold_343_23
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18522..19391)
DNA (870bp) protein (290aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium sp. CAG:352 RepID=R6QLT2_9CLOT
L3_079_029G1_scaffold_343_24
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19519..19863)
DNA (345bp) protein (115aa)
Branched-chain amino acid transport protein (AzlD) n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD8_9CLOT
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:CDC03498.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
branched-chain amino acid transport
L3_079_029G1_scaffold_343_25
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19860..20663)
DNA (804bp) protein (268aa)
AzlC protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N5A4_9CLOT
AzlC protein {ECO:0000313|EMBL:CDC03499.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
branched-chain amino acid transporter
L3_079_029G1_scaffold_343_26
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20732..21808)
DNA (1077bp) protein (359aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium leptum CAG:27 RepID=R6P371_9CLOT
L3_079_029G1_scaffold_343_27
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21850..23532)
DNA (1683bp) protein (561aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
2-isopropylmalate synthase, yeast type (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003638400
L3_079_029G1_scaffold_343_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24007..24711)
DNA (705bp) protein (235aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
histidine phosphatase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000381F076
Histidine phosphatase superfamily (Branch 1) {ECO:0000313|EMBL:EJF41012.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_079_029G1_scaffold_343_29
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24840..25541
DNA (702bp) protein (234aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium RepID=A7VWE7_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDO60094.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_079_029G1_scaffold_343_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25595..26968)
DNA (1374bp) protein (458aa)
Amino acid carrier protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1HAI7_9CLOT
Amino acid carrier protein {ECO:0000313|EMBL:EJF42665.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
amino acid carrier protein
Displaying items 1-30 of 41 in total

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