ggKbase home page

L3_079_029G1_scaffold_364

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_029G1_scaffold_364_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1745)
DNA (1743bp) protein (581aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z5A3_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB90762.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_029G1_scaffold_364_2
Clostridium sp. CAG:571, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1705..2736)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:571 RepID=R5XPE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA17148.1}; TaxID=1262822 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:571.;"
Glycosyltransferases involved in cell wall biogenesis
L3_079_029G1_scaffold_364_3
Enterococcus avium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3000..3548)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Enterococcus avium ATCC 14025 RepID=S0S3W1_ENTAV
Uncharacterized protein {ECO:0000313|EMBL:EOT44101.1}; TaxID=1140002 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus avium ATCC 14025.;"
hypothetical protein
L3_079_029G1_scaffold_364_4
Bacteroides pectinophilus CAG:437, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3579..4124)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bacteroides pectinophilus CAG:437 RepID=R7AAV4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDD57948.1}; TaxID=1263051 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides pectinophilus CAG:437.;"
hypothetical protein
L3_079_029G1_scaffold_364_5
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4330..4734)
DNA (405bp) protein (135aa)
dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XE46_9FIRM
Dihydroneopterin aldolase {ECO:0000313|EMBL:CDA13115.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
L3_079_029G1_scaffold_364_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4746..5918)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003725446
Uncharacterized protein {ECO:0000313|EMBL:EJF41593.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_079_029G1_scaffold_364_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6040..6294
DNA (255bp) protein (85aa)
Smr domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0NAH2_9CLOT
Smr domain protein {ECO:0000313|EMBL:EJF41587.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Smr protein/MutS2
L3_079_029G1_scaffold_364_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6860..9523
DNA (2664bp) protein (888aa)
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:EDT72029.1}; EC=3.6.3.2 {ECO:0000313|EMBL:EDT72029.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
mgtA; magnesium-translocating P-type ATPase (EC:3.6.3.2)
Magnesium-translocating P-type ATPase n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V2B3_CLOPF
L3_079_029G1_scaffold_364_9

Not on your lists

comp(9559..10497)
DNA (939bp) protein (313aa)
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF (Fragment) n=1 Tax=human gut metagenome RepID=K1T5W5_9ZZZZ
Riboflavin biosynthesis protein RibF {ECO:0000313|EMBL:EKC61710.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_079_029G1_scaffold_364_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10494..11417)
DNA (924bp) protein (308aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037677F4
L3_079_029G1_scaffold_364_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11443..12405)
DNA (963bp) protein (321aa)
DHHA1 domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N9I7_9CLOT
DHHA1 domain protein {ECO:0000313|EMBL:EJF41202.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
phosphoesterase RecJ domain-containing protein
L3_079_029G1_scaffold_364_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12395..12838)
DNA (444bp) protein (148aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L601_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000313|EMBL:CBL15046.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_079_029G1_scaffold_364_13
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12854..15286)
DNA (2433bp) protein (811aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT59_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
bacterial translation initiation factor 2 (bIF-2)
L3_079_029G1_scaffold_364_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15293..15658)
DNA (366bp) protein (122aa)
Ribosomal protein L7Ae n=1 Tax=Clostridium leptum CAG:27 RepID=R6N8K7_9CLOT
Ribosomal protein L7Ae {ECO:0000313|EMBL:CDC04699.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Ribosomal protein HS6-type (S12/L30/L7a)
L3_079_029G1_scaffold_364_15
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15615..15902)
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6MY81_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04698.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_079_029G1_scaffold_364_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15980..17086)
DNA (1107bp) protein (369aa)
Transcription termination factor NusA n=1 Tax=Clostridium sp. MSTE9 RepID=J1H6I4_9CLOT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
transcription termination factor NusA
L3_079_029G1_scaffold_364_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17091..17606)
DNA (516bp) protein (172aa)
Ribosome maturation factor RimP n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT55_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_079_029G1_scaffold_364_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17836..18375)
DNA (540bp) protein (180aa)
Putative stage V sporulation protein T n=2 Tax=Clostridium RepID=A7VT52_9CLOT
Putative stage V sporulation protein T {ECO:0000313|EMBL:CDC04695.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
transcriptional regulator, AbrB family
L3_079_029G1_scaffold_364_19
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18603..19361)
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U9A2_ETHHY
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU27261.1}; Flags: Precursor;; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_079_029G1_scaffold_364_20
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19677..20879)
DNA (1203bp) protein (401aa)
YibE/F-like protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KN19_9FIRM
YibE/F-like protein {ECO:0000313|EMBL:EDK24185.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
putative multitransmembrane protein
L3_079_029G1_scaffold_364_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20896..23385)
DNA (2490bp) protein (830aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KN18_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EDK24184.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Calcineurin-like phosphoesterase
L3_079_029G1_scaffold_364_22
unknown

Not on your lists

23847..24437
DNA (591bp) protein (197aa)

This feature has no annotations

L3_079_029G1_scaffold_364_23
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24434..25078)
DNA (645bp) protein (215aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NPD0_9FIRM
L3_079_029G1_scaffold_364_24
unknown

Not on your lists

comp(25252..25656)
DNA (405bp) protein (135aa)

This feature has no annotations

L3_079_029G1_scaffold_364_25
Methanobrevibacter ruminantium, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

25856..26260
DNA (405bp) protein (135aa)
Acetyltransferase GNAT family n=1 Tax=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) RepID=D3E1Q2_METRM
acetyltransferase GNAT family
Acetyltransferase GNAT family {ECO:0000313|EMBL:ADC46463.1}; TaxID=634498 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM; 13430 / M1) (Methanobacterium ruminantium).;"
L3_079_029G1_scaffold_364_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26537..27796)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036561E3
3D domain protein {ECO:0000313|EMBL:EJF41212.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_079_029G1_scaffold_364_27
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29062..29463)
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NZG1_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
SSU ribosomal protein S9P
L3_079_029G1_scaffold_364_28
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29481..29927)
DNA (447bp) protein (149aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:557 RepID=R6GDQ3_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
LSU ribosomal protein L13P
L3_079_029G1_scaffold_364_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30236..30958
DNA (723bp) protein (241aa)
PP-loop family protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AB78_9CLOT
PP-loop family protein {ECO:0000313|EMBL:CCX36626.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L3_079_029G1_scaffold_364_30
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31160..31432
DNA (273bp) protein (91aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D6Q9_DESAJ
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:AFM41483.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
Displaying items 1-30 of 35 in total

View Taxonomy