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L3_079_029G1_scaffold_372

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_029G1_scaffold_372_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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294..1097
DNA (804bp) protein (268aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPC5_9FIRM
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EHL74672.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_079_029G1_scaffold_372_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1094..3928
DNA (2835bp) protein (945aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40688.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Cation transport ATPase
L3_079_029G1_scaffold_372_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4167..4928
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74674.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted membrane protein
L3_079_029G1_scaffold_372_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4968..5426
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74675.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_079_029G1_scaffold_372_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5571..5999)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74676.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
gtrA; GtrA containing transmembrane protein
L3_079_029G1_scaffold_372_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6001..6474)
DNA (474bp) protein (158aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD0_9FIRM
L3_079_029G1_scaffold_372_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6654..7082)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74678.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_079_029G1_scaffold_372_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7461..9203)
DNA (1743bp) protein (581aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40684.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
mutS2; DNA mismatch repair protein MutS2
L3_079_029G1_scaffold_372_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9258..9881)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74680.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
multimeric flavodoxin WrbA family protein
L3_079_029G1_scaffold_372_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9927..10349)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74681.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_079_029G1_scaffold_372_11
unknown

Not on your lists

comp(10368..10814)
DNA (447bp) protein (149aa)

This feature has no annotations

L3_079_029G1_scaffold_372_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10894..11655)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74683.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
putative ATPase
L3_079_029G1_scaffold_372_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11652..12161)
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74684.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
NUDIX hydrolase
L3_079_029G1_scaffold_372_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12127..12987)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74685.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DNA metabolism protein
L3_079_029G1_scaffold_372_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12966..14306)
DNA (1341bp) protein (447aa)
Putative DNA modification/repair radical SAM protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPD9_9FIRM
Putative DNA modification/repair radical SAM protein {ECO:0000313|EMBL:EHL74686.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L3_079_029G1_scaffold_372_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14509..15114)
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74687.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
phosphoglycerate mutase
L3_079_029G1_scaffold_372_17
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15181..15798)
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPE1_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:KJF40679.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
SOS-response transcriptional repressors (RecA-mediated autopeptidases)
L3_079_029G1_scaffold_372_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15988..16230
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74689.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_079_029G1_scaffold_372_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16399..16827
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74690.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
pheromone cAD1 precursor lipoprotein
L3_079_029G1_scaffold_372_20
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18313..19251
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RU40_9FIRM
Plasmid segregation actin-type ATPase ParM {ECO:0000313|EMBL:KJF38249.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
plasmid segregation actin-type ATPase ParM
L3_079_029G1_scaffold_372_21
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19248..19511
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VZE6_9CLOT
Plasmid segregation centromere-binding protein ParR {ECO:0000313|EMBL:KJF38248.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
plasmid segregation centromere-binding protein ParR
L3_079_029G1_scaffold_372_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19664..20206
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF38247.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_079_029G1_scaffold_372_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20674..21351
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL72952.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_079_029G1_scaffold_372_24
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21369..21611
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQE5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO62356.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L3_079_029G1_scaffold_372_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21614..22303
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1UKS8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KJF38940.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_079_029G1_scaffold_372_26
unknown

Not on your lists

22415..22792
DNA (378bp) protein (126aa)

This feature has no annotations

L3_079_029G1_scaffold_372_27
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23010..24158
DNA (1149bp) protein (383aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6R2_9CLOT
L3_079_029G1_scaffold_372_28
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24270..25523
DNA (1254bp) protein (418aa)
excisionase n=1 Tax=Paenibacillus sp. HW567 RepID=UPI00037649BF
excisionase
Excisionase {ECO:0000313|EMBL:AIQ13814.1}; TaxID=44251 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus (Paenibacillus azotofixans).;"
L3_079_029G1_scaffold_372_29
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25520..26596
DNA (1077bp) protein (359aa)
Toprim domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWP2_9CLOT
Toprim domain protein {ECO:0000313|EMBL:CDC41003.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_079_029G1_scaffold_372_30
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26701..27321
DNA (621bp) protein (207aa)
Uncharacterized protein n=3 Tax=root RepID=C0FRR4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG94739.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Displaying items 1-30 of 43 in total

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