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L3_079_062G1_scaffold_5

Search features with annotation key words

Displaying items 1-30 of 416 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G1_scaffold_5_1
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(152..2734)
DNA (2583bp) protein (861aa)
Uncharacterized NAD(FAD)-dependent dehydrogenases (EC:1.6.-.-)
Pyridine nucleotide-disulfide oxidoreductase n=4 Tax=Clostridiales RepID=A5KND1_9FIRM
Nitrite and sulphite reductase 4Fe-4S region {ECO:0000313|EMBL:EFV18523.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_079_062G1_scaffold_5_2
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2774..3172)
DNA (399bp) protein (133aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9L4S8_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EGG83391.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
hypothetical protein
L3_079_062G1_scaffold_5_3
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3464..4705
DNA (1242bp) protein (414aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Clostridium sp. D5 RepID=F0YUP6_9CLOT
L3_079_062G1_scaffold_5_4
unknown

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4737..5870
DNA (1134bp) protein (378aa)

This feature has no annotations

L3_079_062G1_scaffold_5_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5976..6242)
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=2 Tax=Clostridiales RepID=D4M0T9_9FIRM
SSU ribosomal protein S18P
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_062G1_scaffold_5_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6261..6704)
DNA (444bp) protein (148aa)
Single-stranded DNA-binding protein n=5 Tax=Clostridiales RepID=A5KQP9_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
single-strand binding protein
L3_079_062G1_scaffold_5_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6721..7008)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=5 Tax=Clostridiales RepID=A5KQQ0_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
SSU ribosomal protein S6P
L3_079_062G1_scaffold_5_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7136..7324)
DNA (189bp) protein (63aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Clostridiales RepID=D4M0T6_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL24848.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_062G1_scaffold_5_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7350..8501)
DNA (1152bp) protein (384aa)
Sortase, SrtB family n=3 Tax=Clostridiales RepID=A5KQQ2_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:EDK23220.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
sortase, SrtB family
L3_079_062G1_scaffold_5_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8552..9187)
DNA (636bp) protein (212aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KQQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18403.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Uncharacterised ACR, YkgG family COG1556.
L3_079_062G1_scaffold_5_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9438..10949)
DNA (1512bp) protein (504aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW17_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93855.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ATPase family associated with various cellular activities (AAA).
L3_079_062G1_scaffold_5_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10966..12303)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT94_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18012.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted metallopeptidase (DUF2201).
L3_079_062G1_scaffold_5_13
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(12293..13285)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XQY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA14964.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
hypothetical protein
L3_079_062G1_scaffold_5_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13301..13978)
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C9Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23825.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
pphA; Serine/threonine protein phosphatase
L3_079_062G1_scaffold_5_15
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14007..14768)
DNA (762bp) protein (254aa)
CobB/CobQ-like protein n=5 Tax=Clostridiales RepID=A5KQQ4_9FIRM
Adenosylcobyric acid synthase {ECO:0000313|EMBL:EFV18404.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Predicted glutamine amidotransferase
L3_079_062G1_scaffold_5_16
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14765..16159)
DNA (1395bp) protein (465aa)
Mur ligase middle domain protein n=5 Tax=Clostridiales RepID=A5KQQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18405.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
UDP-N-acetylmuramyl tripeptide synthase
L3_079_062G1_scaffold_5_17
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16192..17088)
DNA (897bp) protein (299aa)
Cof-like hydrolase n=5 Tax=Clostridiales RepID=A5KQQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18406.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
HAD-superfamily hydrolase, subfamily IIB
L3_079_062G1_scaffold_5_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17202..18575)
DNA (1374bp) protein (458aa)
MATE efflux family protein n=3 Tax=Lachnospiraceae RepID=A7B1C7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17917.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
MATE efflux family protein
L3_079_062G1_scaffold_5_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18710..19162)
DNA (453bp) protein (151aa)
Molecular chaperone (Small heat shock protein) n=2 Tax=Clostridiales RepID=D4M0S8_9FIRM
Molecular chaperone (small heat shock protein)
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:CDC17510.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_062G1_scaffold_5_20
unknown

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comp(19403..19753)
DNA (351bp) protein (117aa)

This feature has no annotations

L3_079_062G1_scaffold_5_21
unknown

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comp(20146..20409)
DNA (264bp) protein (88aa)

This feature has no annotations

L3_079_062G1_scaffold_5_22
unknown

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comp(20504..21253)
DNA (750bp) protein (250aa)

This feature has no annotations

L3_079_062G1_scaffold_5_23
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21311..22369)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WJW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07159.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_079_062G1_scaffold_5_24
Pseudothermotoga thermarum, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(22359..23471)
DNA (1113bp) protein (371aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=688269 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga.;" source="Pseudothermotoga thermarum DSM 5069.;"
DNA polymerase III polC-type n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YV22_9THEM
DNA polymerase III catalytic subunit, PolC type
L3_079_062G1_scaffold_5_25
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(23508..23906)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GQN8_SELRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL83075.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L3_079_062G1_scaffold_5_26
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24278..24802)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XPJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN39415.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Site-specific recombinase XerC
L3_079_062G1_scaffold_5_27
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25469..25987
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6T2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14270.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_079_062G1_scaffold_5_28
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26027..26908
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6T1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14269.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_079_062G1_scaffold_5_29
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26985..27965
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K8E3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN41030.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_079_062G1_scaffold_5_30
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27978..28316
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6S8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14266.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
Displaying items 1-30 of 416 in total

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