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L3_079_062G1_scaffold_22

Search features with annotation key words

Displaying items 1-30 of 208 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G1_scaffold_22_1
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(332..985)
DNA (654bp) protein (218aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=4 Tax=Clostridiales RepID=A5KNV5_9FIRM
L3_079_062G1_scaffold_22_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(982..1635)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KNV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK23854.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
hypothetical protein
L3_079_062G1_scaffold_22_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1878..3188)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KNV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25531.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted membrane protein
L3_079_062G1_scaffold_22_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3221..5755)
DNA (2535bp) protein (845aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5QA48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25530.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Uncharacterized flavoproteins
L3_079_062G1_scaffold_22_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5961..6596)
DNA (636bp) protein (212aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P798_9FIRM
L3_079_062G1_scaffold_22_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6593..7564)
DNA (972bp) protein (324aa)
Predicted membrane protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M257_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL25319.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_062G1_scaffold_22_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7567..8031)
DNA (465bp) protein (155aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=5 Tax=Clostridiales RepID=A5KNW3_9FIRM
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:EFV18678.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_079_062G1_scaffold_22_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8196..9263)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25427.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_079_062G1_scaffold_22_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9513..11801
DNA (2289bp) protein (763aa)
Endopeptidase La {ECO:0000313|EMBL:EDY34145.1}; EC=3.4.21.53 {ECO:0000313|EMBL:EDY34145.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ATP-dependent protease La (EC:3.4.21.53)
Endopeptidase La n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKS9_9FIRM
L3_079_062G1_scaffold_22_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11818..13188)
DNA (1371bp) protein (457aa)
MATE efflux family protein n=5 Tax=root RepID=E5XDM6_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CCZ27223.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative efflux protein, MATE family
L3_079_062G1_scaffold_22_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13303..13860)
DNA (558bp) protein (186aa)
6-O-methylguanine DNA methyltransferase, DNA binding domain protein n=8 Tax=Clostridium difficile RepID=G6BA21_CLODI
6-O-methylguanine DNA methyltransferase, DNA binding domain protein {ECO:0000313|EMBL:EHJ28558.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
ogt1; methylated-DNA--protein-cysteine methyltransferase 1
L3_079_062G1_scaffold_22_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14182..14850)
DNA (669bp) protein (223aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=2 Tax=Ruminococcus lactaris RepID=B5CTI1_9FIRM
L3_079_062G1_scaffold_22_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14935..15696)
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Clostridium sp. D5 RepID=F0Z070_9CLOT
L3_079_062G1_scaffold_22_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15710..16315)
DNA (606bp) protein (202aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Clostridium sp. D5 RepID=F0Z069_9CLOT
L3_079_062G1_scaffold_22_15
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16312..17721)
DNA (1410bp) protein (470aa)
Amino acid carrier protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIM5_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EFV18827.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
amino acid carrier protein
L3_079_062G1_scaffold_22_16
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17863..19398)
DNA (1536bp) protein (512aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Sensor protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIM4_9FIRM
Signal transduction histidine kinase
L3_079_062G1_scaffold_22_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19415..20092)
DNA (678bp) protein (226aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWK5_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDC15545.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_062G1_scaffold_22_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20353..21039
DNA (687bp) protein (229aa)
Putative manganese efflux pump MntP n=1 Tax=Clostridium sp. D5 RepID=F0Z574_9CLOT
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted membrane protein
L3_079_062G1_scaffold_22_19
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21080..22525
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Blautia hydrogenotrophica CAG:147 RepID=R5BY76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX57612.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
putative efflux protein, MATE family
L3_079_062G1_scaffold_22_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22595..22834)
DNA (240bp) protein (80aa)
PTS HPr component phosphorylation site n=2 Tax=Clostridiales RepID=D4M670_9FIRM
PTS HPr component phosphorylation site.
PTS HPr component phosphorylation site {ECO:0000313|EMBL:CDC15547.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_062G1_scaffold_22_21
unknown

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23037..23498
DNA (462bp) protein (154aa)

This feature has no annotations

L3_079_062G1_scaffold_22_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23768..24259)
DNA (492bp) protein (164aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Phosphodiesterase family protein n=5 Tax=Clostridiales RepID=A5KM42_9FIRM
phosphoesterase, MJ0936 family
L3_079_062G1_scaffold_22_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24256..24813)
DNA (558bp) protein (186aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=2 Tax=Ruminococcus lactaris RepID=B5CTG9_9FIRM
L3_079_062G1_scaffold_22_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24938..26077)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KM44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK24569.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Predicted N6-adenine-specific DNA methylase
L3_079_062G1_scaffold_22_25
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26231..26416)
DNA (186bp) protein (62aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KM45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18817.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_079_062G1_scaffold_22_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(26483..29839)
DNA (3357bp) protein (1119aa)
abfA; alpha-N-arabinofuranosidase (EC:3.2.1.55)
Alpha-L-arabinofuranosidase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2INK8_BIFBI
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:EKE50345.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_079_062G1_scaffold_22_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30358..31404)
DNA (1047bp) protein (349aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XIL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25353.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_079_062G1_scaffold_22_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31621..32823)
DNA (1203bp) protein (401aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBX0_9FIRM
UDP-galactopyranose mutase {ECO:0000313|EMBL:ETD24582.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_079_062G1_scaffold_22_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32949..34181
DNA (1233bp) protein (411aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=5 Tax=Clostridiales RepID=A5KM50_9FIRM
L3_079_062G1_scaffold_22_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34372..35625
DNA (1254bp) protein (418aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=5 Tax=Clostridiales RepID=A5KM51_9FIRM
Displaying items 1-30 of 208 in total

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