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L3_079_062G1_scaffold_273

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G1_scaffold_273_1
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(241..1662)
DNA (1422bp) protein (474aa)
Iron-only hydrogenase maturation rSAM protein HydG n=5 Tax=Clostridiales RepID=A5KQV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26590.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
iron-only hydrogenase maturation protein HydG
L3_079_062G1_scaffold_273_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1716..2822)
DNA (1107bp) protein (369aa)
iron-only hydrogenase maturation protein HydE (EC:2.8.1.6)
Radical SAM domain protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4W7_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:EGB90849.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_079_062G1_scaffold_273_3
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2819..3067)
DNA (249bp) protein (83aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QDF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19899.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
iron-only hydrogenase system regulator
L3_079_062G1_scaffold_273_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3340..3714)
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YU58_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94428.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_062G1_scaffold_273_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3877..4131
DNA (255bp) protein (85aa)
Sporulation protein, YlmC/YmxH family n=5 Tax=Clostridiales RepID=A5KLX9_9FIRM
YlmC/YmxH family Sporulation protein {ECO:0000313|EMBL:EFV19128.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
sporulation protein, YlmC/YmxH family
L3_079_062G1_scaffold_273_6
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4200..4649
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=5 Tax=Clostridiales RepID=A5KLX8_9FIRM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
transcriptional regulator NrdR
L3_079_062G1_scaffold_273_7
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4668..5429
DNA (762bp) protein (254aa)
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q473_9FIRM
L3_079_062G1_scaffold_273_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5501..6256
DNA (756bp) protein (252aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EDY31888.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EDY31888.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Exodeoxyribonuclease III n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4I8_9FIRM
hypothetical protein
L3_079_062G1_scaffold_273_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6350..7483
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22290.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Putative GTPases (G3E family)
L3_079_062G1_scaffold_273_10
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7545..8492
DNA (948bp) protein (316aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87048.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Putative GTPases (G3E family)
L3_079_062G1_scaffold_273_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8553..9515
DNA (963bp) protein (321aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL27362.1}; EC=2.7.1.4 {ECO:0000313|EMBL:CBL27362.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Sugar kinases, ribokinase family n=2 Tax=Clostridiales RepID=D4M002_9FIRM
L3_079_062G1_scaffold_273_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9624..9935)
DNA (312bp) protein (104aa)
UPF0145 protein HMPREF0373_03059 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QKN9_9FIRM
UPF0145 protein HMPREF0373_03059 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_079_062G1_scaffold_273_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10039..11046)
DNA (1008bp) protein (336aa)
Membrane protein n=1 Tax=Clostridium sp. D5 RepID=F0YYL5_9CLOT
Membrane protein {ECO:0000313|EMBL:EGB93317.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_062G1_scaffold_273_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11347..12222
DNA (876bp) protein (292aa)
LysR substrate binding domain protein n=5 Tax=Clostridiales RepID=A5KII5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26084.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator LysR family
L3_079_062G1_scaffold_273_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12255..13004
DNA (750bp) protein (250aa)
ABC transporter ATP-binding protein n=5 Tax=Clostridiales RepID=E5XIY6_9FIRM
Putative FeS assembly ATPase SufC {ECO:0000313|EMBL:EDK25139.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L3_079_062G1_scaffold_273_16
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12991..13929
DNA (939bp) protein (313aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6EKG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01028.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_079_062G1_scaffold_273_17
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14155..15360
DNA (1206bp) protein (402aa)
Putative addiction module antidote protein HigA n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A722_9CLOT
Putative addiction module antidote protein HigA {ECO:0000313|EMBL:CCX36852.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L3_079_062G1_scaffold_273_18
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15525..21515
DNA (5991bp) protein (1997aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6JY97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66185.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L3_079_062G1_scaffold_273_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21581..23077)
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQY3_9CLOT
L3_079_062G1_scaffold_273_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23113..23580)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X8V4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47846.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
prolyl-tRNA synthetase
L3_079_062G1_scaffold_273_21
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23705..24277)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LCF2_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX20376.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L3_079_062G1_scaffold_273_22
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24274..24483)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WPS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA05413.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
4Fe-4S ferredoxin
L3_079_062G1_scaffold_273_23
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24722..25597
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CS12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA74321.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L3_079_062G1_scaffold_273_24
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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25730..26242
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX71831.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Predicted transcription factor, homolog of eukaryotic MBF1
L3_079_062G1_scaffold_273_25
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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26479..27009
DNA (531bp) protein (177aa)
ThiW protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N367_9FIRM
ThiW protein {ECO:0000313|EMBL:CDC00781.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
thiW; ThiW protein
L3_079_062G1_scaffold_273_26
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27223..28044
DNA (822bp) protein (274aa)
Hydroxyethylthiazole kinase, sugar kinase family (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
Hydroxyethylthiazole kinase n=1 Tax=Coprococcus catus GD/7 RepID=D4JBB5_9FIRM
L3_079_062G1_scaffold_273_27
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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28031..28690
DNA (660bp) protein (220aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Dorea sp. CAG:105 RepID=R5D147_9FIRM
L3_079_062G1_scaffold_273_28
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28694..29359
DNA (666bp) protein (222aa)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NT58_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED {ECO:0000313|EMBL:CDC15368.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_062G1_scaffold_273_29
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29469..30314
DNA (846bp) protein (282aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EDR46840.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EDR46840.1};; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G6S9_9FIRM
L3_079_062G1_scaffold_273_30
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30317..31495
DNA (1179bp) protein (393aa)
Putative hydroxymethylpyrimidine transporter CytX n=1 Tax=Clostridium sp. D5 RepID=F0YYM5_9CLOT
Putative hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:EGB93327.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
probable hydroxymethylpyrimidine transporter CytX
Displaying items 1-30 of 41 in total

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