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L3_079_062G1_scaffold_334

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G1_scaffold_334_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(296..1786)
DNA (1491bp) protein (497aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=2 Tax=Ruminococcus lactaris RepID=B5CTF9_9FIRM
L3_079_062G1_scaffold_334_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1807..2976)
DNA (1170bp) protein (390aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P8R8_9FIRM
L3_079_062G1_scaffold_334_3
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3169..4014
DNA (846bp) protein (282aa)
Transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=A5KK27_9FIRM
AraC family Transcriptional regulator {ECO:0000313|EMBL:EFV20601.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
transcriptional regulator, AraC family
L3_079_062G1_scaffold_334_4
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4145..4837
DNA (693bp) protein (231aa)
Peptidoglycan N-acetylglucosamine deacetylase A n=5 Tax=Clostridiales RepID=E5XDQ5_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:EDK25681.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Predicted xylanase/chitin deacetylase
L3_079_062G1_scaffold_334_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4876..5598
DNA (723bp) protein (241aa)
ThiF family protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYN1_RUMGN
ThiF family protein {ECO:0000313|EMBL:EDN79195.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
L3_079_062G1_scaffold_334_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5626..6951
DNA (1326bp) protein (442aa)
ATPase related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0V2_9FIRM
ATPase related to the helicase subunit of the Holliday junction resolvase
ATPase related to the helicase subunit of the Holliday junction resolvase {ECO:0000313|EMBL:CDC17060.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_062G1_scaffold_334_7
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6970..7482)
DNA (513bp) protein (171aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KK31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89109.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_079_062G1_scaffold_334_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7475..8416)
DNA (942bp) protein (314aa)
TIGR01212 family radical SAM protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4G1_9FIRM
TIGR01212 family radical SAM protein {ECO:0000313|EMBL:ETD21942.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
radical SAM protein, TIGR01212 family
L3_079_062G1_scaffold_334_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8413..9567)
DNA (1155bp) protein (385aa)
Malic enzyme (EC:1.1.1.38)
Malic enzyme {ECO:0000313|EMBL:CBL26350.1}; EC=1.1.1.38 {ECO:0000313|EMBL:CBL26350.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Malic enzyme n=2 Tax=Clostridiales RepID=D4M538_9FIRM
L3_079_062G1_scaffold_334_10
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9809..11158
DNA (1350bp) protein (450aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Transcription termination factor Rho n=2 Tax=Clostridiales RepID=D4M539_9FIRM
transcription termination factor Rho
L3_079_062G1_scaffold_334_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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11248..11448
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=6 Tax=root RepID=A5KK35_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
LSU ribosomal protein L31P
L3_079_062G1_scaffold_334_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11554..12468
DNA (915bp) protein (305aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY34028.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted metal-dependent enzyme
L3_079_062G1_scaffold_334_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12468..13388
DNA (921bp) protein (307aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Release factor glutamine methyltransferase n=5 Tax=Clostridiales RepID=A5KK37_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_079_062G1_scaffold_334_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13424..14494
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=5 Tax=Clostridiales RepID=A5KK38_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_079_062G1_scaffold_334_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14501..15400
DNA (900bp) protein (300aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KK39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK25692.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
hypothetical protein
L3_079_062G1_scaffold_334_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15407..16594
DNA (1188bp) protein (396aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4L9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21950.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_079_062G1_scaffold_334_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16626..17687
DNA (1062bp) protein (354aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate transaminase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5E6_9FIRM
L3_079_062G1_scaffold_334_18
unknown

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comp(18413..18604)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_079_062G1_scaffold_334_19
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18641..19486)
DNA (846bp) protein (282aa)
Predicted membrane protein n=3 Tax=Clostridium RepID=D6DE39_CLOSC
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CCY85966.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_062G1_scaffold_334_20
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19679..20071
DNA (393bp) protein (131aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KK45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20618.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_079_062G1_scaffold_334_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20154..21212
DNA (1059bp) protein (353aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=5 Tax=Clostridiales RepID=A5KK46_9FIRM
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L3_079_062G1_scaffold_334_22
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21215..25795
DNA (4581bp) protein (1527aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
DNA polymerase III polC-type n=3 Tax=Clostridiales RepID=E5XDS3_9FIRM
DNA polymerase III subunit alpha
L3_079_062G1_scaffold_334_23
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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25942..27177
DNA (1236bp) protein (412aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=5 Tax=Clostridiales RepID=A5KK81_9FIRM
L3_079_062G1_scaffold_334_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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28055..29182
DNA (1128bp) protein (376aa)
Protein RecA n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4Z1_9FIRM
protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_062G1_scaffold_334_25
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29182..29802
DNA (621bp) protein (207aa)
Regulatory protein RecX n=3 Tax=Clostridiales RepID=E5XF15_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_079_062G1_scaffold_334_26
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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29884..31443
DNA (1560bp) protein (520aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Ribonuclease Y n=4 Tax=Clostridiales RepID=F3AVS6_9FIRM
metal dependent phosphohydrolase
Displaying 26 items

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