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L3_079_062G1_scaffold_488

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G1_scaffold_488_1
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(219..719)
DNA (501bp) protein (167aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJK4_9FIRM
7-cyano-7-deazaguanine reductase
L3_079_062G1_scaffold_488_2
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(734..1312)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D708_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU78991.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
QueT transporter
L3_079_062G1_scaffold_488_3
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1475..2353)
DNA (879bp) protein (293aa)
Pyruvate/2-ketoisovalerate family 2-oxoacid:acceptor oxidoreductase, beta subunit n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DNM2_9FIRM
Pyruvate/2-ketoisovalerate family 2-oxoacid:acceptor oxidoreductase, beta subunit {ECO:0000313|EMBL:EKU78990.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta
L3_079_062G1_scaffold_488_4
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2355..4106)
DNA (1752bp) protein (584aa)
2-oxoacid:acceptor oxidoreductase, alpha subunit n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D354_9FIRM
2-oxoacid:acceptor oxidoreductase, alpha subunit {ECO:0000313|EMBL:EKU78989.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
L3_079_062G1_scaffold_488_5
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4745..5533)
DNA (789bp) protein (263aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
tRNA pseudouridine synthase A n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D3X8_9FIRM
tRNA pseudouridine synthase A
L3_079_062G1_scaffold_488_6
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(5666..6472)
DNA (807bp) protein (269aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJK0_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
cobalt transporter
L3_079_062G1_scaffold_488_7
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6462..7331)
DNA (870bp) protein (290aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D706_9FIRM
ABC transporter
L3_079_062G1_scaffold_488_8
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7322..8164)
DNA (843bp) protein (281aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DNL9_9FIRM
cobalt ABC transporter ATPase
L3_079_062G1_scaffold_488_9
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(8477..8812)
DNA (336bp) protein (112aa)
50S ribosomal protein L17 n=2 Tax=Veillonella RepID=K9D350_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
50S ribosomal protein L17
L3_079_062G1_scaffold_488_10
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8825..9829)
DNA (1005bp) protein (335aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D3X4_9FIRM
DNA-directed RNA polymerase subunit alpha
L3_079_062G1_scaffold_488_11
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(9912..10301)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=2 Tax=Veillonella RepID=K9DJJ5_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
30S ribosomal protein S11
L3_079_062G1_scaffold_488_12
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(10319..10687)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D702_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
30S ribosomal protein S13
L3_079_062G1_scaffold_488_13
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10710..10823)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=2 Tax=Veillonella RepID=K9DNL6_9FIRM
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
50S ribosomal protein L36
L3_079_062G1_scaffold_488_14
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10853..11071)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=7 Tax=Veillonella RepID=E1L666_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
translation initiation factor IF-1
L3_079_062G1_scaffold_488_15
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11093..11863)
DNA (771bp) protein (257aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Methionine aminopeptidase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D3W9_9FIRM
methionine aminopeptidase
L3_079_062G1_scaffold_488_16
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11867..12430)
DNA (564bp) protein (188aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Adenylate kinase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJJ1_9FIRM
adenylate kinase
L3_079_062G1_scaffold_488_17
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(12444..13706)
DNA (1263bp) protein (421aa)
Protein translocase subunit SecY n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D700_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
preprotein translocase subunit SecY
L3_079_062G1_scaffold_488_18
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(13708..14148)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=2 Tax=Veillonella RepID=K9DNK8_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
50S ribosomal protein L15
L3_079_062G1_scaffold_488_19
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(14171..14350)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=2 Tax=Veillonella RepID=K9D343_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
50S ribosomal protein L30
L3_079_062G1_scaffold_488_20
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(14369..14869)
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D3W8_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
30S ribosomal protein S5
L3_079_062G1_scaffold_488_21
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(14888..15250)
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJI5_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
50S ribosomal protein L18
L3_079_062G1_scaffold_488_22
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(15282..15827)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D6Z7_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
50S ribosomal protein L6
L3_079_062G1_scaffold_488_23
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(15851..16249)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=2 Tax=Veillonella RepID=K9DNK5_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
30S ribosomal protein S8
L3_079_062G1_scaffold_488_24
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(16278..16547)
DNA (270bp) protein (90aa)
30S ribosomal protein S14 n=2 Tax=Veillonella RepID=K9D339_9FIRM
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
30S ribosomal protein S14
L3_079_062G1_scaffold_488_25
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(16565..17104)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=2 Tax=Veillonella RepID=K9D3W3_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
50S ribosomal protein L5
L3_079_062G1_scaffold_488_26
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(17130..17456)
DNA (327bp) protein (109aa)
50S ribosomal protein L24 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJI2_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
50S ribosomal protein L24
L3_079_062G1_scaffold_488_27
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(17474..17761)
DNA (288bp) protein (96aa)
50S ribosomal protein L14 n=1 Tax=Veillonella sp. oral taxon 780 str. F0422 RepID=F9N6F0_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
50S ribosomal protein L14
Displaying 27 items

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